Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R6U75_RS07745 Genome accession   NZ_CP137627
Coordinates   1484051..1485421 (-) Length   456 a.a.
NCBI ID   WP_199875377.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain LA0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1479051..1490421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U75_RS07725 (R6U75_07720) - 1479347..1479760 (-) 414 WP_002833252.1 Mini-ribonuclease 3 -
  R6U75_RS07730 (R6U75_07725) cysS 1479753..1481165 (-) 1413 WP_199875379.1 cysteine--tRNA ligase -
  R6U75_RS07735 (R6U75_07730) gltX 1481346..1482833 (-) 1488 WP_199875378.1 glutamate--tRNA ligase -
  R6U75_RS07740 (R6U75_07735) - 1482903..1484033 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  R6U75_RS07745 (R6U75_07740) radA 1484051..1485421 (-) 1371 WP_199875377.1 DNA repair protein RadA Machinery gene
  R6U75_RS07750 (R6U75_07745) - 1485521..1486054 (-) 534 WP_002833247.1 dUTP diphosphatase -
  R6U75_RS07755 (R6U75_07750) - 1486191..1486487 (+) 297 WP_234417714.1 GNAT family N-acetyltransferase -
  R6U75_RS07760 (R6U75_07755) rpiA 1486525..1487211 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  R6U75_RS07765 (R6U75_07760) - 1487281..1488627 (+) 1347 WP_199875376.1 aminopeptidase C -
  R6U75_RS07770 (R6U75_07765) - 1488703..1489083 (-) 381 WP_199875375.1 helix-turn-helix domain-containing protein -
  R6U75_RS07775 (R6U75_07770) - 1489147..1490334 (-) 1188 WP_199875374.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50346.77 Da        Isoelectric Point: 6.7620

>NTDB_id=899510 R6U75_RS07745 WP_199875377.1 1484051..1485421(-) (radA) [Pediococcus pentosaceus strain LA0061]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIVDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=899510 R6U75_RS07745 WP_199875377.1 1484051..1485421(-) (radA) [Pediococcus pentosaceus strain LA0061]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGACGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGAGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGTAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACAGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTGTTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCCGAATTAATGCAGATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTGATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATCGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGAATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
AAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.593

99.781

0.664
  radA Streptococcus mitis NCTC 12261

66.593

99.781

0.664
  radA Streptococcus mitis SK321

66.593

99.781

0.664
  radA Streptococcus pneumoniae TIGR4

66.593

99.781

0.664
  radA Streptococcus pneumoniae D39

66.593

99.781

0.664
  radA Streptococcus pneumoniae R6

66.593

99.781

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.654