Detailed information NTG0089949

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LDO37_RS09555
• Genome accession: NZ_AP025144
• Coordinates: 2143636..2145060 (+)
• Length: 474 a.a.
• NCBI ID: WP_126609466.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain IFO 15640T
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2138636..2150060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO37_RS09535	-	2139846..2140802 (+)	957	WP_126607134.1	5'-nucleotidase	-
LDO37_RS09545	-	2140951..2141664 (+)	714	WP_224055095.1	hypothetical protein	-
LDO37_RS09550	-	2141806..2143080 (+)	1275	WP_224055096.1	magnesium transporter MgtE N-terminal domain-containing protein	-
LDO37_RS09555	sbcB	2143636..2145060 (+)	1425	WP_126609466.1	exodeoxyribonuclease I	Machinery gene
LDO37_RS09560	-	2145074..2145436 (+)	363	WP_101115362.1	CidA/LrgA family protein	-
LDO37_RS09565	-	2145436..2146110 (+)	675	WP_101115406.1	LrgB family protein	-
LDO37_RS09570	cdd	2146434..2147321 (+)	888	WP_126609467.1	cytidine deaminase	-
LDO37_RS09575	purT	2147469..2148644 (+)	1176	WP_126609468.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
LDO37_RS09580	-	2148760..2149269 (+)	510	WP_126607613.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54642.92 Da
• Isoelectric Point: 5.0169

>NTDB_id=89949 LDO37_RS09555 WP_126609466.1 2143636..2145060(+) (sbcB) [Vibrio penaeicida strain IFO 15640T]
MPQDNQPSLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAVSKGLPEP
EFIRKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGVNWPKREDGHT
SFKLEHLSVENGIEHENAHDAMADVIATIEMARKVKEAQPKLFDYLFSMRHKRKLNELVDIVNMTPLMHVSGMFGAECAY
TSWVVPLAWHPTNQNAVAMVNLAMDPTPLIELSSDELRTRLYTRRDQLEEGQLPVPVKLVHLNKCPVLAPAKTLTAENAQ
FIGIDREQCLKNLALIKQHPEIREKLIELYQNKDEYDVDPNVDTQLYNGFFSPVDKATMDIIREKAPEQLAGMEINVKDE
RIAPLLFRYRARHYPWTLDESEQAKWAAHCRDYFESNLPDYMQNLENLVHEHDGDERKVSLLKSVYQYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=89949 LDO37_RS09555 WP_126609466.1 2143636..2145060(+) (sbcB) [Vibrio penaeicida strain IFO 15640T]
ATGCCTCAAGATAATCAGCCCTCTCTGTTTTTCTTCGATTACGAAACCTGGGGAACCAGTCCAGCCAAAGATCGACCAAG
TCAATTTGCAGGCGTAAGAACGGATATGGATCTCAATATCATTGGCGAGCCTTTGGTTATTTACTGCCAACCGCCCTCTG
ATTACCTCCCCTCTCCAGAAGCGGCGCTTATTACCGGCATCACTCCACAAACAGCAGTGTCTAAAGGGCTTCCTGAACCT
GAATTTATACGAAAAATTCATGATGAGCTCTCTACTCCAAACACAACGAGCCTTGGCTACAACAGCATTCGATTTGATGA
TGAAGTTTCTAGGTACACTCTTTACCGGAATTTCTTCGACCCTTACGCATGGAGTTGGCAAAATGGTAACTCTCGTTGGG
ATTTGCTCGATGTGATGCGTGCTTGCCATGCCCTTAGACCGGAAGGCGTCAATTGGCCAAAGCGTGAAGATGGGCACACC
AGCTTTAAACTGGAGCATTTGTCTGTCGAAAATGGGATAGAACACGAAAATGCCCACGATGCGATGGCAGATGTTATCGC
AACCATTGAAATGGCGAGAAAAGTTAAGGAAGCGCAACCTAAGCTGTTTGATTACCTCTTTAGCATGCGCCACAAACGCA
AACTCAATGAGTTGGTCGACATCGTCAACATGACACCGCTAATGCATGTTTCTGGCATGTTTGGGGCAGAATGCGCTTAT
ACCTCTTGGGTTGTTCCTTTGGCTTGGCACCCAACCAACCAAAACGCCGTGGCAATGGTTAACCTTGCCATGGACCCTAC
CCCACTTATTGAACTCAGTTCCGATGAATTAAGAACAAGGCTATACACACGCCGAGATCAACTGGAAGAAGGGCAATTGC
CAGTTCCCGTTAAGCTTGTTCACCTAAATAAATGCCCTGTTCTCGCACCAGCGAAAACGTTAACGGCAGAAAATGCCCAA
TTTATCGGAATCGACAGAGAACAGTGCTTGAAAAATCTGGCACTCATTAAACAACACCCAGAAATTAGAGAAAAGCTTAT
CGAGCTATACCAGAACAAAGATGAGTACGATGTCGATCCAAACGTGGATACTCAGCTTTATAATGGGTTCTTTTCTCCGG
TAGACAAAGCCACCATGGACATCATTCGAGAAAAAGCCCCAGAGCAATTAGCGGGGATGGAAATCAATGTTAAAGATGAA
CGCATTGCCCCACTTCTGTTCCGTTATCGTGCTAGGCACTACCCATGGACGCTCGATGAATCAGAGCAAGCTAAATGGGC
TGCGCATTGTCGAGATTATTTCGAAAGTAATTTGCCCGACTACATGCAGAACCTTGAAAACTTAGTTCACGAACATGATG
GTGATGAAAGAAAGGTATCGCTGTTAAAATCCGTATATCAATACGTAGAAAAATTGGTCTCATAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	73.784	99.789	0.736