Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R6U77_RS14585 Genome accession   NZ_CP137624
Coordinates   2938092..2939846 (-) Length   584 a.a.
NCBI ID   WP_319836200.1    Uniprot ID   -
Organism   Lysinibacillus louembei strain Ll15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2933092..2944846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U77_RS14565 (R6U77_14565) - 2933179..2933568 (-) 390 WP_319836196.1 AsnC family transcriptional regulator -
  R6U77_RS14570 (R6U77_14570) - 2933686..2934228 (+) 543 WP_319836197.1 cysteine hydrolase family protein -
  R6U77_RS14575 (R6U77_14575) - 2934282..2936252 (-) 1971 WP_319836198.1 Na+/H+ antiporter -
  R6U77_RS14580 (R6U77_14580) rcrQ 2936315..2938102 (-) 1788 WP_319836199.1 ABC transporter ATP-binding protein Regulator
  R6U77_RS14585 (R6U77_14585) rcrP 2938092..2939846 (-) 1755 WP_319836200.1 ABC transporter ATP-binding protein Regulator
  R6U77_RS14590 (R6U77_14590) - 2940418..2941608 (-) 1191 WP_319836201.1 multidrug effflux MFS transporter -
  R6U77_RS14595 (R6U77_14595) - 2941879..2942394 (-) 516 Protein_2802 GNAT family N-acetyltransferase -
  R6U77_RS14600 (R6U77_14600) - 2942407..2942859 (-) 453 WP_293927314.1 MarR family winged helix-turn-helix transcriptional regulator -
  R6U77_RS14605 (R6U77_14605) - 2942960..2943556 (+) 597 WP_319836202.1 YitT family protein -
  R6U77_RS14610 (R6U77_14610) - 2943598..2944581 (-) 984 WP_319836203.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64881.41 Da        Isoelectric Point: 7.0459

>NTDB_id=899458 R6U77_RS14585 WP_319836200.1 2938092..2939846(-) (rcrP) [Lysinibacillus louembei strain Ll15]
MLKIFAYLSRKEWLLILTSIIFIIGQVWLDLKLPDYMSEITTLVQTQSSGTRDIWLAGGKMLLCALGSALLAVIVGYFAA
MVATSHAKTLRKTLFEKTLSFSLQEINRFSTASLITRSTNDIAQIQQTVAMGLQVMIKAPILAVWAIWKISDKNWHWSFA
TGIAVLALLIMISTLIIFVLPKFKIVQRLTDNLNRVTREGLMGIHVVRAYNAKEYQGEKFNSANTQLTNTNLLVNRLMAI
MQPGMALIMSGLTLSIYWIGAHLIMDAGGTERIGLFSDMIVFTAYAMQVVMAFMMLAMTFILLPRASVSATRINEVLSTE
AVIIDGQLTAAPTNRKGEIELRNVSFKYPNAEEYVLQNINFTVQQGETVAFIGSTGSGKSTLINLIPRFYDVTDGEVLID
GVNVKEYTQEALHDKLGYVSQKAVLFSGTVKSNVAYGKSSTEAQVEKAIAIAQGQDFVEKMEDSYEATITQGGTNLSGGQ
KQRLSIARAINREPEIFIFDDSFSALDYKTDRQLRMALKQETQGVTTLIVAQRIGTIKDCDKIIVLDEGKIVGIGKHEEL
LQNCQTYQEIAYSQLSKEELENDK

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=899458 R6U77_RS14585 WP_319836200.1 2938092..2939846(-) (rcrP) [Lysinibacillus louembei strain Ll15]
ATGCTGAAAATATTTGCCTACTTAAGCCGCAAGGAATGGCTGCTTATTCTAACAAGTATCATCTTTATTATTGGACAAGT
TTGGCTCGATTTAAAGCTGCCTGACTATATGTCCGAAATTACAACACTTGTACAAACACAGAGCAGTGGAACGAGGGATA
TTTGGCTCGCTGGTGGGAAAATGCTGCTGTGCGCACTGGGGAGTGCATTATTAGCAGTAATTGTTGGTTATTTTGCTGCA
ATGGTTGCGACATCACATGCTAAAACATTGCGCAAAACATTATTTGAAAAAACATTATCCTTTTCATTACAGGAAATTAA
TCGTTTTTCCACAGCCAGCTTGATTACGCGCTCCACAAATGACATTGCACAAATTCAACAAACTGTTGCAATGGGGTTAC
AAGTAATGATTAAAGCGCCAATTTTAGCCGTTTGGGCTATCTGGAAAATTTCCGATAAAAATTGGCATTGGTCGTTTGCA
ACAGGTATCGCAGTGCTTGCACTACTCATTATGATTAGCACATTAATTATTTTCGTCTTACCGAAATTTAAAATTGTGCA
AAGATTAACAGATAACTTGAATCGTGTGACACGAGAGGGACTGATGGGCATTCATGTAGTACGTGCCTACAATGCCAAGG
AGTATCAAGGCGAAAAGTTTAATAGTGCTAATACACAACTAACAAATACGAATCTACTCGTCAATCGCCTAATGGCAATT
ATGCAGCCTGGTATGGCGCTAATTATGTCAGGTTTAACGCTGTCTATTTATTGGATTGGTGCACATTTAATTATGGATGC
AGGAGGCACAGAGCGAATCGGCTTATTCAGCGATATGATTGTTTTCACAGCCTATGCAATGCAGGTCGTGATGGCATTTA
TGATGCTGGCGATGACCTTTATTTTACTGCCGAGAGCATCTGTATCTGCAACGCGTATTAATGAGGTATTGTCGACAGAG
GCAGTAATTATTGATGGTCAGCTAACAGCTGCACCAACGAATCGTAAAGGGGAAATTGAGCTGCGTAATGTGAGCTTTAA
ATACCCAAATGCAGAGGAGTATGTCTTACAAAATATTAACTTCACTGTTCAACAAGGGGAAACGGTTGCCTTCATCGGCT
CGACAGGTAGTGGGAAAAGTACATTAATCAACTTAATTCCACGCTTTTATGATGTAACGGATGGGGAAGTGCTAATTGAT
GGTGTGAATGTAAAGGAATATACGCAGGAGGCACTGCATGACAAGCTCGGCTATGTATCGCAAAAGGCAGTACTATTTTC
AGGTACAGTGAAATCCAATGTTGCTTATGGGAAATCGTCAACAGAGGCGCAAGTGGAAAAAGCCATTGCGATTGCACAAG
GGCAAGACTTTGTTGAAAAAATGGAGGATTCCTACGAGGCTACTATCACACAAGGCGGAACAAACCTTTCTGGTGGGCAA
AAACAGCGTCTTTCCATTGCGAGAGCGATTAACCGTGAGCCTGAAATTTTCATTTTCGATGATTCCTTCTCGGCGTTAGA
TTACAAAACAGACCGCCAATTGCGCATGGCTTTAAAGCAAGAAACACAAGGTGTGACGACATTAATTGTGGCACAGCGTA
TCGGCACAATTAAAGATTGCGATAAAATTATCGTATTAGATGAAGGAAAAATCGTTGGTATAGGTAAGCATGAGGAGCTC
TTACAAAATTGCCAAACATATCAAGAAATTGCTTATTCACAGCTATCAAAGGAGGAGCTTGAAAATGACAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-502)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53

100

0.545