Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABFK62_RS08770 Genome accession   NZ_CP156044
Coordinates   1816119..1816754 (+) Length   211 a.a.
NCBI ID   WP_000264036.1    Uniprot ID   A0A7U3Y6I5
Organism   Acinetobacter baumannii strain D13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811119..1821754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFK62_RS08745 (ABFK62_08745) - 1811959..1812972 (+) 1014 WP_001096103.1 phosphotransferase -
  ABFK62_RS08750 (ABFK62_08750) murU 1812972..1813661 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABFK62_RS08755 (ABFK62_08755) rsmG 1813749..1814381 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABFK62_RS08760 (ABFK62_08760) - 1814403..1815185 (+) 783 WP_000057212.1 ParA family protein -
  ABFK62_RS08765 (ABFK62_08765) - 1815182..1816069 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  ABFK62_RS08770 (ABFK62_08770) exbB 1816119..1816754 (+) 636 WP_000264036.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABFK62_RS08775 (ABFK62_08775) - 1816770..1817198 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  ABFK62_RS08780 (ABFK62_08780) msbA 1817195..1818922 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ABFK62_RS08785 (ABFK62_08785) lpxK 1818925..1819935 (+) 1011 WP_000050479.1 tetraacyldisaccharide 4'-kinase -
  ABFK62_RS08790 (ABFK62_08790) kdsB 1819945..1820706 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABFK62_RS08795 (ABFK62_08795) - 1820718..1821698 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23212.13 Da        Isoelectric Point: 6.4861

>NTDB_id=899390 ABFK62_RS08770 WP_000264036.1 1816119..1816754(+) (exbB) [Acinetobacter baumannii strain D13]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=899390 ABFK62_RS08770 WP_000264036.1 1816119..1816754(+) (exbB) [Acinetobacter baumannii strain D13]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y6I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393