Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R6U76_RS21225 Genome accession   NZ_CP137622
Coordinates   4272247..4273197 (-) Length   316 a.a.
NCBI ID   WP_048394199.1    Uniprot ID   A0A2X0XHC4
Organism   Lysinibacillus capsici strain Lm01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4267247..4278197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U76_RS21200 (R6U76_21200) - 4267942..4268487 (+) 546 WP_066038009.1 hypothetical protein -
  R6U76_RS21205 (R6U76_21205) - 4269139..4269453 (-) 315 WP_054549614.1 antibiotic biosynthesis monooxygenase -
  R6U76_RS21210 (R6U76_21210) - 4269455..4270480 (-) 1026 WP_054549615.1 siderophore ABC transporter substrate-binding protein -
  R6U76_RS21215 (R6U76_21215) - 4270543..4271304 (-) 762 WP_048394201.1 ABC transporter ATP-binding protein -
  R6U76_RS21220 (R6U76_21220) - 4271301..4272254 (-) 954 WP_319839694.1 iron chelate uptake ABC transporter family permease subunit -
  R6U76_RS21225 (R6U76_21225) ceuB 4272247..4273197 (-) 951 WP_048394199.1 ABC transporter permease Machinery gene
  R6U76_RS21230 (R6U76_21230) - 4273482..4274534 (-) 1053 WP_048394197.1 membrane protein -
  R6U76_RS21235 (R6U76_21235) menC 4274586..4275692 (-) 1107 WP_319839695.1 o-succinylbenzoate synthase -
  R6U76_RS21240 (R6U76_21240) - 4275714..4276538 (-) 825 WP_048394192.1 GNAT family N-acetyltransferase -
  R6U76_RS21245 (R6U76_21245) - 4276538..4277683 (-) 1146 WP_048394190.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34810.02 Da        Isoelectric Point: 10.1980

>NTDB_id=899374 R6U76_RS21225 WP_048394199.1 4272247..4273197(-) (ceuB) [Lysinibacillus capsici strain Lm01]
MKIRYLLTATVLLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=899374 R6U76_RS21225 WP_048394199.1 4272247..4273197(-) (ceuB) [Lysinibacillus capsici strain Lm01]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTTTGCTGTCTATTGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCGGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCATATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACAACAGTGGTGTTAACAGTCGGTATC
ATTCCATTTCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTGTTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0XHC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528