Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R6U79_RS19600 Genome accession   NZ_CP137621
Coordinates   4358606..4359241 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain 1.8.4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4353606..4364241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U79_RS19570 (R6U79_19570) murB 4354703..4355722 (-) 1020 WP_003247146.1 UDP-N-acetylmuramate dehydrogenase -
  R6U79_RS19575 (R6U79_19575) - 4355719..4356183 (-) 465 WP_319902024.1 low molecular weight protein-tyrosine-phosphatase -
  R6U79_RS19580 (R6U79_19580) kdsB 4356183..4356947 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R6U79_RS19585 (R6U79_19585) - 4356944..4357129 (-) 186 WP_003247142.1 Trm112 family protein -
  R6U79_RS19590 (R6U79_19590) lpxK 4357174..4358175 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  R6U79_RS19595 (R6U79_19595) - 4358175..4358609 (-) 435 WP_014859651.1 ExbD/TolR family protein -
  R6U79_RS19600 (R6U79_19600) exbB 4358606..4359241 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R6U79_RS19605 (R6U79_19605) comA 4359397..4361613 (-) 2217 WP_319902025.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6U79_RS19610 (R6U79_19610) - 4361756..4362262 (+) 507 Protein_3858 DUF2062 domain-containing protein -
  R6U79_RS19615 (R6U79_19615) - 4362272..4363051 (-) 780 WP_003247128.1 ABC transporter permease -
  R6U79_RS19620 (R6U79_19620) - 4363048..4363980 (-) 933 WP_003247127.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=899332 R6U79_RS19600 WP_003247132.1 4358606..4359241(-) (exbB) [Pseudomonas putida strain 1.8.4]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=899332 R6U79_RS19600 WP_003247132.1 4358606..4359241(-) (exbB) [Pseudomonas putida strain 1.8.4]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825