Detailed information NTG0899299

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: R6M76_RS05675
• Genome accession: NZ_CP137608
• Coordinates: 1192645..1194018 (-)
• Length: 457 a.a.
• NCBI ID: WP_318151200.1
• Uniprot ID: -
• Organism: Ligilactobacillus salivarius strain C2-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1187645..1199018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6M76_RS05655 (R6M76_05655)	-	1187923..1188330 (-)	408	WP_003700685.1	Mini-ribonuclease 3	-
R6M76_RS05660 (R6M76_05660)	cysS	1188323..1189735 (-)	1413	WP_318151198.1	cysteine--tRNA ligase	-
R6M76_RS05665 (R6M76_05665)	gltX	1189889..1191376 (-)	1488	WP_318151199.1	glutamate--tRNA ligase	-
R6M76_RS05670 (R6M76_05670)	-	1191507..1192619 (-)	1113	WP_160944264.1	PIN/TRAM domain-containing protein	-
R6M76_RS05675 (R6M76_05675)	radA	1192645..1194018 (-)	1374	WP_318151200.1	DNA repair protein RadA	Machinery gene
R6M76_RS05680 (R6M76_05680)	-	1194036..1194572 (-)	537	WP_014568595.1	hypothetical protein	-
R6M76_RS05685 (R6M76_05685)	-	1194728..1195006 (+)	279	WP_160944263.1	GNAT family N-acetyltransferase	-
R6M76_RS05690 (R6M76_05690)	-	1195095..1196429 (+)	1335	WP_003706508.1	aminopeptidase C	-
R6M76_RS05695 (R6M76_05695)	-	1196617..1196970 (+)	354	WP_069469110.1	bacteriocin immunity protein	-
R6M76_RS05700 (R6M76_05700)	-	1197140..1197814 (-)	675	WP_318151201.1	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	-
R6M76_RS05705 (R6M76_05705)	-	1197836..1198780 (-)	945	WP_003700695.1	AEC family transporter	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49720.36 Da
• Isoelectric Point: 8.0259

>NTDB_id=899299 R6M76_RS05675 WP_318151200.1 1192645..1194018(-) (radA) [Ligilactobacillus salivarius strain C2-1]
MAKTKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKRESSTKAQPRVSISGTTVKPKLIDDVSTVETPRFKTNLEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSTLGKKVLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIR
KNIELLKPDFVVIDSVQTMQEPEMAAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLEERLKGATGSAVVASLEGTRPILVELQALVTPTAF
GNAKRTTTGLDHNRVALLMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLT
GEIRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGWMPPKEIEVVGVSTLNQALKLIFS

Nucleotide

• Length: 1374 bp

>NTDB_id=899299 R6M76_RS05675 WP_318151200.1 1192645..1194018(-) (radA) [Ligilactobacillus salivarius strain C2-1]
TTGGCGAAAACTAAGACAAGATATGTTTGTCAAAATTGTGAATATATCTCTCCACGCTATTTAGGACGCTGCCCTAATTG
TGGTTCTTGGAATAGCTTGGTAGAGGAAATAGAGAAAAGGGAAAGTTCAACTAAAGCACAGCCTAGAGTTAGTATCTCTG
GTACAACAGTGAAACCTAAATTAATTGATGATGTTTCTACTGTAGAAACTCCAAGATTTAAAACTAATTTAGAAGAATTG
AATCGTGTTTTAGGTGGCGGAATTGTTCCCGGATCTTTAGTGTTAATTGGTGGAGATCCAGGTATTGGCAAGTCTACATT
ATTACTACAAGTTTCTGGACAATTATCTACTCTCGGGAAAAAGGTTCTTTATGTTTCTGGGGAAGAAAGTGCAACTCAAA
TTAAATTACGTGCGGATCGTTTAGGAGTTCATGGAACTGAGCTATATTTATATCCTGAAACAGATATGGATAGTATTAGA
AAAAATATTGAACTTTTAAAGCCTGATTTTGTTGTAATCGATTCGGTGCAGACAATGCAGGAGCCAGAAATGGCAGCCGC
AGTTGGAAGTGTTTCTCAAATTAGGGAAGTAACTGGAGATTTGATGCAAATTGCGAAAACTAATGGGATAACTGTCTTTG
TTGTAGGACATGTTACTAAAGGTGGAGCAATTGCAGGACCTAAAATTTTAGAACATATGGTAGATACTGTTCTTTATTTT
GAGGGAGATCAACATAGAACATTTAGAATTTTACGAGCGGTTAAAAATAGATTTGGTTCAACTAATGAAATTGGAATCTT
TGAAATGAAAAATGGAGGATTAAGCGAAGTTGCTAATCCATCAGAGATTTTTCTAGAAGAAAGATTAAAAGGGGCTACGG
GATCAGCTGTCGTTGCTTCTCTTGAAGGAACTAGACCCATATTGGTAGAATTACAAGCACTAGTAACACCGACTGCATTT
GGAAATGCTAAGCGAACAACAACTGGTTTAGATCACAATCGAGTTGCGTTACTGATGGCAGTACTTGAAAAAAGAGCTGG
TTTGTTATTGCAAAATCAGGATGCTTATTTGAAGGCTGCTGGTGGAGTGAAGTTAGATGAGCCAGCAATAGATTTAGCCA
TTGCTGTTAGTTTAGTTTCTAGTTATCGCGATGCAGAAACAAGACCAACTGACTGTTTTATAGGGGAAGTAGGATTAACT
GGTGAAATAAGACGAGTTAATCGTATTGAACAGCGTGTTGTTGAGGCTGCTAAGCTAGGATTTAAGCGAGTATTTTTACC
AAAGAACAACTTAGATGGTTGGATGCCTCCAAAAGAGATTGAAGTAGTAGGCGTAAGTACACTAAATCAAGCATTAAAAC
TAATTTTTAGTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (364-430)

• AAA domain (AAA_25) (67-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	68.49	100	0.685
radA	Streptococcus mitis SK321	68.271	100	0.683
radA	Streptococcus pneumoniae Rx1	68.271	100	0.683
radA	Streptococcus pneumoniae D39	68.271	100	0.683
radA	Streptococcus pneumoniae R6	68.271	100	0.683
radA	Streptococcus pneumoniae TIGR4	68.271	100	0.683
radA	Bacillus subtilis subsp. subtilis str. 168	65.121	99.125	0.646