Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R6M76_RS02730 Genome accession   NZ_CP137608
Coordinates   579688..581355 (+) Length   555 a.a.
NCBI ID   WP_318151519.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain C2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574688..586355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6M76_RS02700 (R6M76_02700) folD 575070..575927 (+) 858 WP_134354452.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  R6M76_RS02705 (R6M76_02705) xseA 575920..577260 (+) 1341 WP_003705928.1 exodeoxyribonuclease VII large subunit -
  R6M76_RS02710 (R6M76_02710) - 577260..577487 (+) 228 WP_003705929.1 exodeoxyribonuclease VII small subunit -
  R6M76_RS02715 (R6M76_02715) - 577453..578370 (+) 918 WP_318151608.1 farnesyl diphosphate synthase -
  R6M76_RS02720 (R6M76_02720) - 578373..579200 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  R6M76_RS02725 (R6M76_02725) - 579225..579683 (+) 459 WP_003699854.1 arginine repressor -
  R6M76_RS02730 (R6M76_02730) recN 579688..581355 (+) 1668 WP_318151519.1 DNA repair protein RecN Machinery gene
  R6M76_RS02735 (R6M76_02735) lexA 581419..582039 (-) 621 WP_003705933.1 transcriptional repressor LexA -
  R6M76_RS02740 (R6M76_02740) - 582150..582440 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  R6M76_RS02745 (R6M76_02745) - 582567..582791 (+) 225 WP_003705934.1 YneF family protein -
  R6M76_RS02750 (R6M76_02750) yihA 582874..583464 (+) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R6M76_RS02755 (R6M76_02755) - 583482..583781 (+) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  R6M76_RS02760 (R6M76_02760) - 583962..585701 (+) 1740 WP_318151520.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63220.03 Da        Isoelectric Point: 4.8139

>NTDB_id=899288 R6M76_RS02730 WP_318151519.1 579688..581355(+) (recN) [Ligilactobacillus salivarius strain C2-1]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIGEAGLKINEEDELIEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDISDLSENLQEINTKISDAFYSLEDVARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHIRIVKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLEELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=899288 R6M76_RS02730 WP_318151519.1 579688..581355(+) (recN) [Ligilactobacillus salivarius strain C2-1]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTACTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTAGCAACTTTACGAAAGGTAGGAGAAACATTAATAGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGGAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAATAG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATATTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGTCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAAT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTACATTATCATATTAGAATTGTAAAAGAATTAAGAGAAATGGAGAATGCGGAACAAAATTCAGAAAAGCA
AGAGAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTAGCAATAAAACTTTCGAAACAGCGGAAAAAAAGCGCTA
AAAAATTAGAAAAAATGATTCATGAACAATTAAGTGCATTATATATGGACAAAGCCGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATTGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGGATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAGGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTATTATATTTCAAA
ATCTGTTAACGATGGTAGAACAGAAACTTCATTAGAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACGTTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.902

100

0.494