Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R6M76_RS01930 Genome accession   NZ_CP137608
Coordinates   450410..452227 (+) Length   605 a.a.
NCBI ID   WP_318151500.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain C2-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 445410..457227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6M76_RS01915 (R6M76_01915) - 446853..448499 (+) 1647 WP_318151498.1 phosphoenolpyruvate carboxykinase (ATP) -
  R6M76_RS01920 (R6M76_01920) - 448603..449364 (+) 762 WP_318151499.1 adaptor protein MecA -
  R6M76_RS01925 (R6M76_01925) - 449413..450312 (+) 900 WP_164479767.1 competence protein CoiA -
  R6M76_RS01930 (R6M76_01930) pepF 450410..452227 (+) 1818 WP_318151500.1 oligoendopeptidase F Regulator
  R6M76_RS01935 (R6M76_01935) - 452316..452912 (-) 597 WP_318151606.1 ClpXP adapter SpxH family protein -
  R6M76_RS01940 (R6M76_01940) - 453091..453948 (+) 858 WP_160945075.1 phosphate ABC transporter substrate-binding protein -
  R6M76_RS01945 (R6M76_01945) pstC 453959..454876 (+) 918 WP_087448883.1 phosphate ABC transporter permease subunit PstC -
  R6M76_RS01950 (R6M76_01950) pstA 454876..455766 (+) 891 WP_318151501.1 phosphate ABC transporter permease PstA -
  R6M76_RS01955 (R6M76_01955) pstB 455771..456565 (+) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70541.64 Da        Isoelectric Point: 5.3586

>NTDB_id=899284 R6M76_RS01930 WP_318151500.1 450410..452227(+) (pepF) [Ligilactobacillus salivarius strain C2-1]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTTDQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLRFPIVKDDNGDDIQLSHGVYGKLIESTNREVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNLK
GVPLTAKSISEYYLELNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=899284 R6M76_RS01930 WP_318151500.1 450410..452227(+) (pepF) [Ligilactobacillus salivarius strain C2-1]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
CGGATCAAGGTAGTCAAAGATTTTTACAAATTATTGAAAATTTCTTAAGTATTAATAGAAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAG
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAGTTAATAGAATCTACAA
ATAGGGAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTTTTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TCAGAAAGAAGATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TACAATTACATTCAAGCACAAATTGAAGCTAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTTGAAG
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGTAGTGATGTGATAAG
TGATCCTGAAATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCGGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

97.851

0.522