Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R5H38_RS08890 Genome accession   NZ_CP137602
Coordinates   1732134..1732847 (-) Length   237 a.a.
NCBI ID   WP_318150591.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727134..1737847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS08865 - 1727596..1727754 (-) 159 WP_318150589.1 hypothetical protein -
  R5H38_RS08870 trxA 1727872..1728186 (-) 315 WP_130554392.1 thioredoxin -
  R5H38_RS08875 - 1728447..1730780 (-) 2334 WP_318150590.1 endonuclease MutS2 -
  R5H38_RS08880 - 1731214..1731762 (-) 549 WP_130554394.1 CvpA family protein -
  R5H38_RS08885 - 1731759..1732076 (-) 318 WP_130554395.1 hypothetical protein -
  R5H38_RS08890 treR 1732134..1732847 (-) 714 WP_318150591.1 trehalose operon repressor Regulator
  R5H38_RS08895 treP 1733078..1735078 (+) 2001 WP_130554396.1 PTS system trehalose-specific EIIBC component -
  R5H38_RS08900 treC 1735157..1736779 (+) 1623 WP_274504295.1 alpha,alpha-phosphotrehalase -
  R5H38_RS10320 - 1736951..1737047 (+) 97 Protein_1727 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27667.69 Da        Isoelectric Point: 7.2022

>NTDB_id=899254 R5H38_RS08890 WP_318150591.1 1732134..1732847(-) (treR) [Streptococcus parasuis strain 221006]
MKKYQEIYNDLKEKIRTNFYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTVVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=899254 R5H38_RS08890 WP_318150591.1 1732134..1732847(-) (treR) [Streptococcus parasuis strain 221006]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATTTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGTGGTTGTTGATTTAGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGGTCCATAGATGGAAAGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATCGCAAAAGGTTCAATCTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGCGATACACGACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.427

98.734

0.498