Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R5H38_RS08405 Genome accession   NZ_CP137602
Coordinates   1633015..1633749 (-) Length   244 a.a.
NCBI ID   WP_318150552.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628015..1638749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS08380 - 1628952..1629806 (-) 855 WP_217374243.1 helix-turn-helix domain-containing protein -
  R5H38_RS08385 rpmB 1630108..1630296 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  R5H38_RS08390 trmB 1630499..1631137 (-) 639 WP_171989646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  R5H38_RS08395 ccrZ 1631134..1631928 (-) 795 WP_217374244.1 cell cycle regulator CcrZ -
  R5H38_RS08400 - 1631978..1633018 (-) 1041 WP_318150551.1 ABC transporter permease -
  R5H38_RS08405 pptA 1633015..1633749 (-) 735 WP_318150552.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS08410 - 1633812..1634225 (+) 414 WP_130555357.1 HIT family protein -
  R5H38_RS08415 - 1634227..1634532 (+) 306 WP_318150553.1 chemotaxis protein -
  R5H38_RS08420 brpA 1634671..1635846 (-) 1176 WP_318150554.1 biofilm formation/cell division transcriptional regulator BrpA -
  R5H38_RS08425 - 1635843..1636370 (-) 528 WP_217374250.1 GNAT family N-acetyltransferase -
  R5H38_RS08430 tsaE 1636363..1636803 (-) 441 WP_217375192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  R5H38_RS08435 - 1636909..1638573 (-) 1665 WP_217374251.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26977.30 Da        Isoelectric Point: 4.6053

>NTDB_id=899253 R5H38_RS08405 WP_318150552.1 1633015..1633749(-) (pptA) [Streptococcus parasuis strain 221006]
MLEVKNITGGYINIPVVKDVSFAVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEAVALAYDLTWDQAWSRVQGLLTVFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAIADLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=899253 R5H38_RS08405 WP_318150552.1 1633015..1633749(-) (pptA) [Streptococcus parasuis strain 221006]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCGCTGTTGAGAGCGG
TCAATTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACAACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACACTTAAGGAACATTTAGAGGCAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGGTTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATAATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGATGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTGCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.293

97.951

0.689
  pptA Streptococcus thermophilus LMD-9

69.038

97.951

0.676