Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   R5H38_RS02655 Genome accession   NZ_CP137602
Coordinates   507356..508405 (+) Length   349 a.a.
NCBI ID   WP_274504630.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 502356..513405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS02620 - 503085..504179 (+) 1095 WP_318150813.1 sensor histidine kinase -
  R5H38_RS02625 - 504176..504775 (+) 600 Protein_478 response regulator -
  R5H38_RS02630 - 504893..505114 (+) 222 WP_274504627.1 YqgQ family protein -
  R5H38_RS02635 - 505111..505497 (+) 387 WP_130554731.1 rhodanese-like domain-containing protein -
  R5H38_RS02640 - 505530..506264 (+) 735 WP_318150814.1 hypothetical protein -
  R5H38_RS02645 rsmD 506352..506891 (+) 540 WP_277836802.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R5H38_RS02650 coaD 506881..507369 (+) 489 WP_217374760.1 pantetheine-phosphate adenylyltransferase -
  R5H38_RS02655 sepM 507356..508405 (+) 1050 WP_274504630.1 SepM family pheromone-processing serine protease Regulator
  R5H38_RS02660 - 508689..509342 (+) 654 WP_289649155.1 YutD family protein -
  R5H38_RS02665 rlmN 509351..510463 (+) 1113 WP_318150815.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  R5H38_RS02670 - 510460..510972 (+) 513 WP_318150816.1 VanZ family protein -
  R5H38_RS02675 nadE 511407..512231 (-) 825 WP_217374765.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37866.68 Da        Isoelectric Point: 4.1974

>NTDB_id=899224 R5H38_RS02655 WP_274504630.1 507356..508405(+) (sepM) [Streptococcus parasuis strain 221006]
MKKNKKWLLIVSIIMGTLLIWFSVFVRLPYYIESPGGASDIREVLTVNNEEDKEPGSYNFTYVSVLQATALQLLIAQFNP
YADIVSAEEMTGGADSEEYYRIAQFYMETSQNMAKYQGLTLAGKDVEMDFFGVYVLDLAEDSTFKNVLNIGDTVVSINGQ
TFESSQELIKYVSGLELDSDVTVGYVSDGEEKTAHGKIIKLSNGKNGIGITLVDHTEVRSSVPIDFQTGGIGGPSAGLMF
TLAIYTQLAEPDLRDGRVIAGTGTIEQDGSVGDIGGADKKVLSAINAGASVFFVPNNPVDPEILKKNPTAKTNYEEAKEA
AEKANADIEIVPVTTVQEAIDYLKSTKSE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=899224 R5H38_RS02655 WP_274504630.1 507356..508405(+) (sepM) [Streptococcus parasuis strain 221006]
ATGAAGAAAAATAAGAAATGGCTATTGATTGTTTCAATTATTATGGGGACGTTATTGATATGGTTTTCCGTTTTTGTACG
TCTACCATATTATATTGAGAGTCCTGGAGGGGCTTCGGATATTCGGGAAGTATTGACAGTCAACAATGAAGAAGATAAGG
AGCCAGGTTCTTATAATTTTACCTATGTATCGGTCTTGCAGGCAACAGCCTTACAGTTGCTGATTGCTCAGTTTAACCCC
TACGCAGATATTGTTTCTGCAGAAGAAATGACGGGTGGTGCAGACAGTGAAGAATACTATCGGATAGCTCAATTTTATAT
GGAAACCTCTCAAAACATGGCTAAATATCAAGGACTGACCTTGGCTGGCAAGGATGTGGAGATGGATTTCTTTGGGGTAT
ATGTGTTGGATTTGGCAGAAGACTCTACGTTTAAAAATGTATTGAATATCGGTGATACGGTTGTTAGTATAAATGGTCAA
ACGTTTGAATCTTCTCAGGAACTAATTAAATATGTTTCAGGCTTAGAACTTGATAGTGATGTAACAGTTGGCTATGTTAG
TGATGGAGAAGAAAAGACTGCCCACGGAAAAATTATCAAATTATCAAATGGTAAAAACGGAATTGGTATCACGCTAGTAG
ACCATACTGAGGTAAGAAGTTCTGTCCCGATTGATTTCCAAACAGGAGGAATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACATTAGCTATTTATACACAGCTGGCTGAGCCAGACTTGCGTGATGGTCGTGTTATTGCAGGAACAGGAACGATTGAACA
AGATGGTTCCGTTGGAGACATCGGAGGAGCAGATAAAAAAGTATTATCTGCGATTAATGCTGGTGCAAGTGTTTTCTTTG
TTCCAAATAATCCAGTGGACCCAGAAATTTTGAAGAAGAATCCAACAGCTAAGACAAACTATGAAGAGGCAAAAGAAGCA
GCAGAAAAGGCCAATGCTGATATTGAAATCGTACCAGTGACGACTGTTCAAGAAGCCATTGATTATTTGAAGAGTACTAA
GAGCGAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

61.561

99.14

0.61