Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CBOS2020_RS05370 Genome accession   NZ_AP025140
Coordinates   1122914..1123867 (+) Length   317 a.a.
NCBI ID   WP_003361009.1    Uniprot ID   -
Organism   Clostridium botulinum strain Osaka2020     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117914..1128867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBOS2020_RS05345 (CBOS2020_10400) - 1118068..1118304 (+) 237 WP_282056695.1 SHOCT domain-containing protein -
  CBOS2020_RS05350 (CBOS2020_10410) - 1118564..1119265 (+) 702 WP_061316247.1 response regulator transcription factor -
  CBOS2020_RS05355 (CBOS2020_10420) - 1119265..1120671 (+) 1407 WP_012721102.1 HAMP domain-containing sensor histidine kinase -
  CBOS2020_RS05360 (CBOS2020_10430) - 1120988..1121674 (-) 687 WP_012720854.1 DNA alkylation repair protein -
  CBOS2020_RS05365 (CBOS2020_10440) - 1121910..1122668 (-) 759 WP_041173323.1 AraC family transcriptional regulator -
  CBOS2020_RS05370 (CBOS2020_10450) ceuB 1122914..1123867 (+) 954 WP_003361009.1 ABC transporter permease Machinery gene
  CBOS2020_RS05375 (CBOS2020_10460) - 1123857..1124807 (+) 951 WP_041348196.1 iron chelate uptake ABC transporter family permease subunit -
  CBOS2020_RS05380 (CBOS2020_10470) - 1124804..1125559 (+) 756 WP_003361010.1 ATP-binding cassette domain-containing protein -
  CBOS2020_RS05385 (CBOS2020_10480) - 1125629..1126573 (+) 945 WP_282056703.1 siderophore ABC transporter substrate-binding protein -
  CBOS2020_RS05390 (CBOS2020_10490) - 1126775..1127776 (+) 1002 WP_003361012.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34902.31 Da        Isoelectric Point: 10.0382

>NTDB_id=89920 CBOS2020_RS05370 WP_003361009.1 1122914..1123867(+) (ceuB) [Clostridium botulinum strain Osaka2020]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIIVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=89920 CBOS2020_RS05370 WP_003361009.1 1122914..1123867(+) (ceuB) [Clostridium botulinum strain Osaka2020]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATCCCAAGACTTATAAGTATTATTA
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTTGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATACAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAGGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTGGGAAAA
ATACCATTTCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGACTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505

Multiple sequence alignment