Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R6U48_RS25620 Genome accession   NZ_CP137562
Coordinates   5428509..5429144 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain CPA0087     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5423509..5434144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U48_RS25590 (R6U48_25585) murB 5424607..5425626 (-) 1020 WP_031630910.1 UDP-N-acetylmuramate dehydrogenase -
  R6U48_RS25595 (R6U48_25590) - 5425623..5426087 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  R6U48_RS25600 (R6U48_25595) kdsB 5426087..5426851 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R6U48_RS25605 (R6U48_25600) - 5426851..5427036 (-) 186 WP_003091157.1 Trm112 family protein -
  R6U48_RS25610 (R6U48_25605) lpxK 5427074..5428072 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  R6U48_RS25615 (R6U48_25610) - 5428072..5428512 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  R6U48_RS25620 (R6U48_25615) exbB 5428509..5429144 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R6U48_RS25625 (R6U48_25620) comA 5429217..5431442 (-) 2226 WP_003122482.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6U48_RS25630 (R6U48_25625) - 5431573..5432106 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  R6U48_RS25635 (R6U48_25630) - 5432194..5433438 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=899163 R6U48_RS25620 WP_003091163.1 5428509..5429144(-) (exbB) [Pseudomonas aeruginosa strain CPA0087]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=899163 R6U48_RS25620 WP_003091163.1 5428509..5429144(-) (exbB) [Pseudomonas aeruginosa strain CPA0087]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81