Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   R6U47_RS30000 Genome accession   NZ_CP137561
Coordinates   6411905..6412462 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6406905..6417462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS29985 (R6U47_29985) pilY1 6406997..6410488 (-) 3492 WP_324001818.1 type 4a pilus biogenesis protein PilY1 -
  R6U47_RS29990 (R6U47_29990) pilX 6410500..6411087 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  R6U47_RS29995 (R6U47_29995) pilW 6411084..6411908 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  R6U47_RS30000 (R6U47_30000) pilV 6411905..6412462 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  R6U47_RS30005 (R6U47_30005) - 6412453..6412959 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  R6U47_RS30010 (R6U47_30010) - 6413065..6413574 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  R6U47_RS30015 (R6U47_30015) thiO 6413709..6414803 (+) 1095 WP_023087807.1 glycine oxidase ThiO -
  R6U47_RS30020 (R6U47_30020) pilR 6414849..6416186 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=899128 R6U47_RS30000 WP_003119423.1 6411905..6412462(-) (pilV) [Pseudomonas aeruginosa strain CPA0053]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=899128 R6U47_RS30000 WP_003119423.1 6411905..6412462(-) (pilV) [Pseudomonas aeruginosa strain CPA0053]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995