Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KUA50_RS02860 Genome accession   NZ_CP137559
Coordinates   730030..731475 (+) Length   481 a.a.
NCBI ID   WP_218457399.1    Uniprot ID   -
Organism   Segatella hominis strain HDD12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 725030..736475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUA50_RS02850 (KUA50_002850) - 725062..728004 (+) 2943 WP_218457397.1 TonB-dependent receptor -
  KUA50_RS02855 (KUA50_002855) - 728151..729854 (-) 1704 WP_218457398.1 SulP family inorganic anion transporter -
  KUA50_RS02860 (KUA50_002860) radA 730030..731475 (+) 1446 WP_218457399.1 DNA repair protein RadA Machinery gene
  KUA50_RS02865 (KUA50_002865) queC 731525..732178 (+) 654 WP_022111156.1 7-cyano-7-deazaguanine synthase QueC -
  KUA50_RS02870 (KUA50_002870) - 732228..733358 (+) 1131 WP_022111157.1 TlpA disulfide reductase family protein -
  KUA50_RS02880 (KUA50_002880) - 733802..735454 (-) 1653 WP_218457400.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52159.78 Da        Isoelectric Point: 6.4405

>NTDB_id=899093 KUA50_RS02860 WP_218457399.1 730030..731475(+) (radA) [Segatella hominis strain HDD12]
MAKDKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIAGDTGTQAARNAGMTMRHGGAATMFGGVRASDGAAQPMKLRD
ISAHDEPRIDMHDEELNRVLGGGMVQGSITLLGGEPGIGKSTLTLQTILNIPEKKVLYVSGEESAHQIKLRADRLASSIT
TVGTDVNLDHISILCETSLEKIFSHIQQVAPEIVVIDSIQTIATEDVDSSPGSVSQVRECAAALLRFAKTSGIPVILIGH
INKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQGGLRQVSNPSELLLTEDHDGLSGVAI
SSAIEGVRPFLVETQALVSTAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIAA
VLSSNVDTAIEAGWCMCGEVGLSGEVRPVSRIEQRIAEAEKLGFQHIVIPKYNYSGFDHSKYKIEIHPVRKVEEALRCLF
G

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=899093 KUA50_RS02860 WP_218457399.1 730030..731475(+) (radA) [Segatella hominis strain HDD12]
ATGGCAAAAGACAAGATAGCATACGTTTGCAGCAATTGTGGACAGGAATCAGCCAAGTGGATTGGCAAATGTCCGAGTTG
TGGACAATGGAATACTTTCAAGGAAATCCGAATCGCCGGAGATACGGGAACCCAGGCTGCCCGAAATGCGGGCATGACGA
TGAGACATGGTGGCGCTGCTACTATGTTTGGCGGCGTGCGTGCTTCGGACGGAGCAGCCCAACCCATGAAGCTTCGTGAT
ATCTCTGCCCACGATGAACCCCGTATTGATATGCACGATGAGGAACTGAACCGTGTACTCGGTGGTGGAATGGTGCAGGG
CAGTATCACTTTGTTGGGTGGTGAACCGGGTATCGGTAAGAGTACGCTCACACTGCAGACCATTCTCAATATCCCTGAAA
AGAAAGTGCTCTATGTGAGCGGAGAGGAGAGTGCGCATCAGATCAAGTTGAGAGCCGACAGGTTGGCTTCTTCGATAACG
ACCGTTGGAACGGATGTGAATCTCGACCATATTTCTATCCTTTGTGAAACTTCCTTAGAGAAGATTTTCTCCCATATCCA
GCAGGTGGCTCCAGAAATAGTGGTCATCGACTCCATCCAGACCATCGCTACAGAGGATGTGGATAGCAGTCCGGGCAGTG
TCTCGCAGGTCAGAGAGTGTGCTGCAGCTTTGTTGCGATTTGCCAAAACCAGTGGTATTCCAGTTATCCTGATAGGACAT
ATTAATAAGGAGGGAACGCTTGCAGGACCTAAGATACTGGAACATATCGTGGATACCGTCATCCAGTTTGAGGGCGACCA
GCATTATATGTATCGCATCCTCCGTAGTATCAAAAACCGATTTGGAAGTACTTCGGAATTGGGAATCTATGAGATGCAGC
AGGGAGGACTCCGACAGGTCAGTAATCCGTCAGAACTCCTCTTGACAGAGGATCACGACGGACTTTCGGGTGTGGCCATC
AGCAGTGCCATCGAGGGTGTGCGGCCATTCCTGGTCGAGACTCAAGCCTTGGTTTCCACTGCCGCCTATGGAACTCCCCA
GCGCTCAGCTACGGGTTTCGACCAGCGCCGACTCAACATGCTTTTGGCGGTATTGGAAAAGCGTGTGGGATTCAAGTTAA
TGCAGAAGGACGTGTTCCTGAATATAGCAGGAGGACTGAGAGTCACTGACTTGGCGATGGATTTGAGCGTGATAGCCGCT
GTCTTGAGCAGTAATGTAGATACAGCCATAGAGGCTGGCTGGTGTATGTGTGGCGAGGTAGGTCTGAGCGGAGAAGTGCG
CCCCGTAAGCCGTATCGAACAACGGATAGCTGAGGCAGAGAAACTCGGTTTCCAGCACATCGTCATCCCCAAATACAACT
ATTCGGGATTTGATCATTCGAAATACAAGATAGAGATTCACCCGGTCAGAAAGGTGGAAGAGGCGCTGAGATGCCTGTTC
GGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-245)

Subunit ChlI of Mg-chelatase (ChlI)

(364-453)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.24

100

0.484
  radA Streptococcus mitis NCTC 12261

44.283

100

0.443
  radA Streptococcus pneumoniae Rx1

44.283

100

0.443
  radA Streptococcus pneumoniae D39

44.283

100

0.443
  radA Streptococcus pneumoniae R6

44.283

100

0.443
  radA Streptococcus pneumoniae TIGR4

44.283

100

0.443
  radA Streptococcus mitis SK321

44.075

100

0.441