Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   R6K63_RS27515 Genome accession   NZ_CP137556
Coordinates   5803634..5804158 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain CDC1270     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5798634..5809158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6K63_RS27495 pilR 5799896..5801233 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  R6K63_RS27500 thiO 5801279..5802373 (-) 1095 WP_023435615.1 glycine oxidase ThiO -
  R6K63_RS27505 - 5802513..5803013 (+) 501 WP_023435614.1 GspH/FimT family pseudopilin -
  R6K63_RS27510 - 5803136..5803624 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  R6K63_RS27515 pilV 5803634..5804158 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  R6K63_RS27520 - 5804167..5804982 (+) 816 WP_016562347.1 PilW family protein -
  R6K63_RS27525 - 5804979..5805584 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  R6K63_RS27530 - 5805598..5809074 (+) 3477 WP_023103514.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=899079 R6K63_RS27515 WP_003116261.1 5803634..5804158(+) (pilV) [Pseudomonas aeruginosa strain CDC1270]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=899079 R6K63_RS27515 WP_003116261.1 5803634..5804158(+) (pilV) [Pseudomonas aeruginosa strain CDC1270]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598