Detailed information NTG0899046

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: R5R33_RS10050
• Genome accession: NZ_CP137555
• Coordinates: 2329547..2330530 (+)
• Length: 327 a.a.
• NCBI ID: WP_318955721.1
• Uniprot ID: A0AAU0N5B7
• Organism: Microbulbifer pacificus strain SPO729
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2324547..2335530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5R33_RS10020 (R5R33_10020)	rpmB	2324561..2324797 (+)	237	WP_318952560.1	50S ribosomal protein L28	-
R5R33_RS10025 (R5R33_10025)	rpmG	2324831..2324986 (+)	156	WP_066960071.1	50S ribosomal protein L33	-
R5R33_RS10030 (R5R33_10030)	mutM	2325253..2326068 (+)	816	WP_318952561.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
R5R33_RS10035 (R5R33_10035)	ggt	2326069..2327817 (-)	1749	WP_318952562.1	gamma-glutamyltransferase	-
R5R33_RS10040 (R5R33_10040)	coaD	2327906..2328394 (-)	489	WP_318952563.1	pantetheine-phosphate adenylyltransferase	-
R5R33_RS10045 (R5R33_10045)	rsmD	2328503..2329093 (-)	591	WP_318952564.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
R5R33_RS10050 (R5R33_10050)	pilA	2329547..2330530 (+)	984	WP_318955721.1	signal recognition particle-docking protein FtsY	Machinery gene
R5R33_RS10055 (R5R33_10055)	ftsE	2330763..2331446 (+)	684	WP_138234223.1	cell division ATP-binding protein FtsE	-
R5R33_RS10060 (R5R33_10060)	ftsX	2331430..2332440 (+)	1011	WP_318952565.1	permease-like cell division protein FtsX	-
R5R33_RS10065 (R5R33_10065)	rpoH	2332785..2333639 (+)	855	WP_318952566.1	RNA polymerase sigma factor RpoH	-
R5R33_RS10070 (R5R33_10070)	-	2333916..2334293 (+)	378	WP_318952567.1	DUF423 domain-containing protein	-
R5R33_RS10075 (R5R33_10075)	trmB	2334508..2335245 (+)	738	WP_318952568.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35112.18 Da
• Isoelectric Point: 5.2701

>NTDB_id=899046 R5R33_RS10050 WP_318955721.1 2329547..2330530(+) (pilA) [Microbulbifer pacificus strain SPO729]
MQPEPAPAEIALPQEKPKKEGFFARIRRGLARTSSQFAEGMGNLFLGAKEIDEDLMEELETQLLMADVGVEATAEIIDRL
TDRVSRRELSNGEALYLALQDELASLLDKVEAPLAIDQAKQPFVILVVGVNGVGKTTTIGKLAHRYLNEGKSVMLAAGDT
FRAAAVEQLQVWGQRHNVPVVAQHTGADSASVIFDAIQSAKTRGVDVVIADTAGRLHNKAHLMEELSKVRRVMGKLDESA
PHEVLLVLDAGTGQNAISQAETFRNATGVTGLVLTKLDGTAKGGVIFALAQKLGIPVRFIGVGEQSEDLQPFVAKDFVAA
LFNRAQG

Nucleotide

• Length: 984 bp

>NTDB_id=899046 R5R33_RS10050 WP_318955721.1 2329547..2330530(+) (pilA) [Microbulbifer pacificus strain SPO729]
GTGCAGCCTGAGCCGGCTCCGGCAGAAATCGCCCTACCCCAGGAAAAGCCGAAGAAAGAGGGTTTCTTTGCCCGCATCCG
GCGCGGTCTCGCGCGCACCAGCAGCCAGTTTGCCGAGGGTATGGGCAACCTGTTCCTGGGTGCCAAGGAGATCGACGAAG
ACCTGATGGAGGAGCTCGAAACCCAGCTGCTGATGGCGGACGTGGGGGTGGAAGCTACCGCCGAGATCATCGACCGATTG
ACCGACCGCGTGTCCCGCCGCGAGCTCTCCAATGGCGAGGCGCTTTACCTGGCATTGCAGGATGAACTGGCGAGCCTGCT
GGACAAGGTGGAGGCGCCGCTCGCTATCGATCAGGCCAAGCAGCCGTTTGTGATCCTGGTGGTGGGCGTCAACGGCGTCG
GCAAGACCACCACCATCGGCAAGCTGGCGCACCGCTACCTGAACGAGGGCAAGTCGGTGATGCTGGCGGCCGGCGATACT
TTCCGCGCGGCAGCTGTTGAACAATTGCAGGTATGGGGCCAGCGCCACAATGTGCCGGTGGTGGCCCAGCACACCGGTGC
GGATAGCGCATCCGTGATCTTCGATGCGATCCAGTCCGCCAAAACCCGCGGCGTGGATGTGGTGATCGCCGATACCGCCG
GCCGTCTGCACAACAAGGCGCACCTGATGGAAGAACTGTCCAAGGTGCGCCGGGTGATGGGCAAACTGGATGAATCCGCG
CCCCACGAGGTGCTGCTGGTGCTGGATGCGGGCACCGGCCAGAACGCGATCTCCCAGGCCGAAACCTTCAGGAATGCCAC
CGGTGTCACCGGCCTGGTGCTGACCAAGTTGGACGGCACCGCCAAGGGCGGGGTGATTTTCGCGCTGGCACAGAAGCTGG
GGATTCCGGTACGCTTTATCGGAGTCGGCGAGCAGTCGGAAGACCTGCAGCCGTTTGTGGCGAAAGACTTTGTCGCCGCG
CTGTTTAATCGGGCTCAGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (39-103)

• SRP54-type protein, GTPase domain (SRP54) (122-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.443	93.272	0.498