Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   R5R33_RS06005 Genome accession   NZ_CP137555
Coordinates   1340441..1341859 (+) Length   472 a.a.
NCBI ID   WP_318955134.1    Uniprot ID   A0AAU0N127
Organism   Microbulbifer pacificus strain SPO729     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335441..1346859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R33_RS05990 (R5R33_05990) - 1335948..1336892 (+) 945 WP_318955131.1 outer membrane protein assembly factor BamD -
  R5R33_RS05995 (R5R33_05995) - 1336986..1338614 (-) 1629 WP_318955132.1 NAD+ synthase -
  R5R33_RS06000 (R5R33_06000) - 1338717..1340396 (+) 1680 WP_318955133.1 HAMP domain-containing sensor histidine kinase -
  R5R33_RS06005 (R5R33_06005) pilR 1340441..1341859 (+) 1419 WP_318955134.1 sigma-54 dependent transcriptional regulator Regulator
  R5R33_RS06010 (R5R33_06010) - 1341957..1342526 (+) 570 WP_318955135.1 GspH/FimT family pseudopilin -
  R5R33_RS06015 (R5R33_06015) - 1342528..1342983 (-) 456 WP_318955136.1 type IV pilin protein -
  R5R33_RS06020 (R5R33_06020) - 1343059..1346136 (-) 3078 WP_318955137.1 PilC/PilY family type IV pilus protein -
  R5R33_RS06025 (R5R33_06025) - 1346146..1346697 (-) 552 WP_318955138.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51832.22 Da        Isoelectric Point: 5.2792

>NTDB_id=899036 R5R33_RS06005 WP_318955134.1 1340441..1341859(+) (pilR) [Microbulbifer pacificus strain SPO729]
MADRQPIALVVDDEPDICNLISMTLQRMDVRADIAMSVAEARRRLAEKHYDFCLTDMRLPDGDGLQVVEAIQELPADRAL
PVAVITAHGNMDTAIAALKLGAFDFVSKPVNLERLRNLVQLALRLNEGRFLARQEFPALFQGQSDAIQALRVQIEKIARS
DAPVHITGEAGSGKELAARCIHDQGPRCNRAFVPVHCATIPAEQLEPLLFGGPIQSERASGLLQTANGGTLYFDDVTELP
QDIQVKLLRAIQEKGFRSAATGENIKLDIRILTGSRKPLTDEVRAGRFRSDLYYLINVIELAIPPLRERREDIPLLTRNV
LRRISSESRGAAAKASQDAVLALQTYSFPGNLRELENILERAVTLGESSTLYARDLVIPAASPIPCNTGTRQNDLSPLIP
PSVSTGTLLAAYPGQFSSSDFETLDDFLQSIEREAIESALGETGGNKTAAAEKLGISFRSLRYRLKKLNMEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=899036 R5R33_RS06005 WP_318955134.1 1340441..1341859(+) (pilR) [Microbulbifer pacificus strain SPO729]
ATGGCCGACCGACAACCCATTGCCCTGGTGGTGGATGACGAGCCCGACATCTGCAACCTGATTTCAATGACCCTGCAACG
CATGGACGTGCGCGCGGATATCGCCATGTCTGTTGCCGAGGCGCGGCGTCGCCTTGCGGAAAAACATTACGATTTCTGCC
TCACTGATATGCGCTTACCGGACGGTGACGGCCTGCAGGTCGTGGAAGCCATTCAGGAACTACCCGCCGATCGCGCACTC
CCGGTCGCCGTCATCACCGCCCACGGCAATATGGATACGGCCATTGCCGCGCTCAAACTCGGCGCTTTCGATTTTGTTAG
TAAACCCGTCAATTTGGAGCGCCTGCGCAACCTCGTGCAGCTGGCACTGCGCCTCAACGAAGGTCGCTTTCTGGCACGCC
AGGAATTCCCGGCGCTGTTTCAAGGCCAGTCGGATGCCATCCAGGCACTCCGGGTACAGATTGAAAAAATTGCACGCAGC
GATGCACCGGTGCATATCACCGGCGAGGCGGGCTCAGGCAAGGAACTGGCCGCAAGGTGCATCCACGATCAGGGCCCCCG
CTGTAATCGCGCGTTCGTCCCGGTGCACTGCGCAACCATCCCCGCCGAACAACTTGAGCCGCTGCTGTTTGGCGGCCCGA
TACAATCCGAGCGTGCCTCGGGGCTGCTGCAGACCGCAAACGGCGGCACTCTCTACTTCGATGATGTGACAGAGCTGCCG
CAGGATATTCAGGTCAAACTGTTGCGCGCCATTCAGGAAAAAGGCTTTCGCTCTGCTGCCACCGGTGAAAATATAAAGCT
GGACATTCGTATACTGACAGGTTCACGCAAACCGCTCACCGACGAAGTCCGCGCAGGCCGTTTTCGCAGCGACCTTTACT
ATCTGATCAATGTCATCGAACTCGCCATACCACCACTGCGCGAGAGACGCGAAGATATCCCGCTGTTAACACGCAATGTG
TTGCGGCGTATAAGCAGCGAATCCCGAGGTGCGGCAGCAAAGGCATCCCAGGATGCCGTCCTCGCCCTGCAGACCTATTC
CTTTCCGGGCAATCTGCGGGAGCTGGAAAATATACTCGAGCGCGCTGTCACCCTGGGGGAGAGCAGTACACTCTATGCGC
GGGATCTTGTCATTCCTGCGGCGTCGCCAATTCCCTGCAATACGGGCACAAGGCAAAATGATCTTTCCCCATTGATTCCG
CCCAGTGTATCCACAGGTACTCTCCTTGCGGCTTACCCCGGACAGTTTTCCTCTTCAGACTTTGAAACACTGGATGACTT
CTTACAATCCATCGAACGGGAAGCGATTGAAAGCGCCCTCGGTGAAACCGGCGGGAACAAGACTGCAGCGGCGGAGAAGC
TGGGAATCAGTTTTCGCTCCCTGCGCTACCGGCTGAAAAAGCTCAATATGGAAGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Sigma-54 interaction domain (Sigma54_activat)

(142-301)

Response regulator receiver domain (Response_reg)

(9-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.894

99.788

0.498
  pilR Acinetobacter baumannii strain A118

42.62

100

0.434