Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ABEG41_RS09305 Genome accession   NZ_CP155795
Coordinates   1765536..1765967 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain D137     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760536..1770967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS09285 (ABEG41_09285) spoVS 1761097..1761357 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ABEG41_RS09290 (ABEG41_09290) tdh 1761623..1762666 (+) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  ABEG41_RS09295 (ABEG41_09295) kbl 1762679..1763857 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  ABEG41_RS09300 (ABEG41_09300) miaB 1764005..1765534 (+) 1530 WP_088467662.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ABEG41_RS09305 (ABEG41_09305) ymcA 1765536..1765967 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ABEG41_RS09310 (ABEG41_09310) cotE 1766228..1766773 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ABEG41_RS09315 (ABEG41_09315) hexA 1766906..1769482 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=898854 ABEG41_RS09305 WP_003231834.1 1765536..1765967(+) (ymcA) [Bacillus subtilis strain D137]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=898854 ABEG41_RS09305 WP_003231834.1 1765536..1765967(+) (ymcA) [Bacillus subtilis strain D137]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1