Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   R5Y34_RS02890 Genome accession   NZ_CP137530
Coordinates   569382..570380 (-) Length   332 a.a.
NCBI ID   WP_002221268.1    Uniprot ID   A0AAD2J6P7
Organism   Neisseria meningitidis strain EXNM678     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 564382..575380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS02865 - 565760..566386 (-) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -
  R5Y34_RS02870 greB 566445..566936 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  R5Y34_RS02875 purF 567036..568580 (-) 1545 WP_101174617.1 amidophosphoribosyltransferase -
  R5Y34_RS02880 - 568725..568895 (-) 171 WP_153308407.1 hypothetical protein -
  R5Y34_RS02885 - 568892..569389 (-) 498 WP_002214153.1 CvpA family protein -
  R5Y34_RS02890 tpc 569382..570380 (-) 999 WP_002221268.1 cell division protein FtsN Machinery gene
  R5Y34_RS02895 folC 570393..571667 (-) 1275 WP_002221267.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  R5Y34_RS02900 - 571699..572139 (-) 441 WP_002221266.1 protein YgfX -
  R5Y34_RS02905 - 572144..572503 (-) 360 WP_002221265.1 hypothetical protein -
  R5Y34_RS02910 - 572576..573304 (-) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  R5Y34_RS02915 rsmA 573477..574256 (-) 780 WP_002221264.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  R5Y34_RS02920 - 574453..575163 (+) 711 WP_002221263.1 DNA glycosylase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35577.94 Da        Isoelectric Point: 10.1759

>NTDB_id=898835 R5Y34_RS02890 WP_002221268.1 569382..570380(-) (tpc) [Neisseria meningitidis strain EXNM678]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=898835 R5Y34_RS02890 WP_002221268.1 569382..570380(-) (tpc) [Neisseria meningitidis strain EXNM678]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAACGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAACGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934