Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   R5Y32_RS07430 Genome accession   NZ_CP137529
Coordinates   1484975..1485568 (+) Length   197 a.a.
NCBI ID   WP_002255851.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM666     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479975..1490568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y32_RS07405 - 1480218..1480805 (-) 588 WP_154074380.1 superoxide dismutase -
  R5Y32_RS07410 dnaB 1480968..1482374 (+) 1407 WP_002213843.1 replicative DNA helicase -
  R5Y32_RS07415 pilH 1482683..1483351 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R5Y32_RS07420 pilV 1483381..1484001 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  R5Y32_RS07425 pilJ 1483998..1484996 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  R5Y32_RS07430 pilK 1484975..1485568 (+) 594 WP_002255851.1 pilus assembly protein Machinery gene
  R5Y32_RS07435 pilX 1485573..1486046 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  R5Y32_RS07440 - 1486778..1487203 (-) 426 Protein_1424 AzlC family ABC transporter permease -
  R5Y32_RS07445 dut 1487346..1487798 (+) 453 WP_002250021.1 dUTP diphosphatase -
  R5Y32_RS07450 dapC 1487874..1489061 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  R5Y32_RS07455 yaaA 1489323..1490102 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21512.39 Da        Isoelectric Point: 6.3728

>NTDB_id=898816 R5Y32_RS07430 WP_002255851.1 1484975..1485568(+) (pilK) [Neisseria meningitidis strain EXNM666]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMVYGKGTQSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=898816 R5Y32_RS07430 WP_002255851.1 1484975..1485568(+) (pilK) [Neisseria meningitidis strain EXNM666]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGTATATGGGAAAGGCACGCAAAGTGTCAGCAAACCGCCGCGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.888