Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   R5Y32_RS06490 Genome accession   NZ_CP137529
Coordinates   1308322..1309320 (-) Length   332 a.a.
NCBI ID   WP_002221268.1    Uniprot ID   A0AAD2J6P7
Organism   Neisseria meningitidis strain EXNM666     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1303322..1314320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y32_RS06465 - 1304700..1305326 (-) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -
  R5Y32_RS06470 greB 1305385..1305876 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  R5Y32_RS06475 purF 1305976..1307520 (-) 1545 WP_101174617.1 amidophosphoribosyltransferase -
  R5Y32_RS06480 - 1307665..1307835 (-) 171 WP_153308407.1 hypothetical protein -
  R5Y32_RS06485 - 1307832..1308329 (-) 498 WP_002214153.1 CvpA family protein -
  R5Y32_RS06490 tpc 1308322..1309320 (-) 999 WP_002221268.1 cell division protein FtsN Machinery gene
  R5Y32_RS06495 folC 1309333..1310607 (-) 1275 WP_002221267.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  R5Y32_RS06500 - 1310639..1311079 (-) 441 WP_002221266.1 protein YgfX -
  R5Y32_RS06505 - 1311084..1311443 (-) 360 WP_002221265.1 hypothetical protein -
  R5Y32_RS06510 - 1311516..1312244 (-) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  R5Y32_RS06515 rsmA 1312417..1313196 (-) 780 WP_002221264.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  R5Y32_RS06520 - 1313393..1314103 (+) 711 WP_002221263.1 DNA glycosylase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35577.94 Da        Isoelectric Point: 10.1759

>NTDB_id=898807 R5Y32_RS06490 WP_002221268.1 1308322..1309320(-) (tpc) [Neisseria meningitidis strain EXNM666]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=898807 R5Y32_RS06490 WP_002221268.1 1308322..1309320(-) (tpc) [Neisseria meningitidis strain EXNM666]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAACGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAACGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934