Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABEG41_RS02925 Genome accession   NZ_CP155795
Coordinates   563541..564182 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain D137     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 558541..569182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS02895 (ABEG41_02895) ydfE 559733..560356 (-) 624 WP_038427424.1 flavin reductase family protein -
  ABEG41_RS02900 (ABEG41_02900) ydfF 560446..561126 (+) 681 WP_033883515.1 winged helix-turn-helix domain-containing protein -
  ABEG41_RS02905 (ABEG41_02905) ydfG 561206..561649 (-) 444 WP_014475936.1 carboxymuconolactone decarboxylase family protein -
  ABEG41_RS02910 (ABEG41_02910) - 561735..561914 (-) 180 WP_010886421.1 hypothetical protein -
  ABEG41_RS02915 (ABEG41_02915) - 561911..562054 (-) 144 WP_038427427.1 hypothetical protein -
  ABEG41_RS02920 (ABEG41_02920) ydfH 562325..563548 (+) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  ABEG41_RS02925 (ABEG41_02925) vraR 563541..564182 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  ABEG41_RS02930 (ABEG41_02930) ydfJ 564298..566472 (+) 2175 WP_038427429.1 MMPL family transporter -
  ABEG41_RS02935 (ABEG41_02935) cesA 566886..567788 (-) 903 WP_038427431.1 carboxylesterase -
  ABEG41_RS02940 (ABEG41_02940) ydfK 567991..568680 (-) 690 WP_033883509.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=898804 ABEG41_RS02925 WP_003244318.1 563541..564182(+) (vraR) [Bacillus subtilis strain D137]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=898804 ABEG41_RS02925 WP_003244318.1 563541..564182(+) (vraR) [Bacillus subtilis strain D137]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCAAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362