Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R5029_RS14620 Genome accession   NZ_CP137522
Coordinates   3065855..3066490 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain HPA0118     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3060855..3071490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5029_RS14605 (R5029_14605) - 3061561..3062805 (+) 1245 WP_003091166.1 lipoprotein-releasing ABC transporter permease subunit -
  R5029_RS14610 (R5029_14610) - 3062893..3063426 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  R5029_RS14615 (R5029_14615) comA 3063557..3065782 (+) 2226 WP_014603928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R5029_RS14620 (R5029_14620) exbB 3065855..3066490 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R5029_RS14625 (R5029_14625) - 3066487..3066927 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  R5029_RS14630 (R5029_14630) lpxK 3066927..3067925 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  R5029_RS14635 (R5029_14635) - 3067963..3068148 (+) 186 WP_003091157.1 Trm112 family protein -
  R5029_RS14640 (R5029_14640) kdsB 3068148..3068912 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R5029_RS14645 (R5029_14645) - 3068912..3069376 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  R5029_RS14650 (R5029_14650) murB 3069373..3070392 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=898754 R5029_RS14620 WP_003091163.1 3065855..3066490(+) (exbB) [Pseudomonas aeruginosa strain HPA0118]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=898754 R5029_RS14620 WP_003091163.1 3065855..3066490(+) (exbB) [Pseudomonas aeruginosa strain HPA0118]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81