Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABD409_RS06485 Genome accession   NZ_CP155741
Coordinates   1275191..1276852 (-) Length   553 a.a.
NCBI ID   WP_002989120.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 400/03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270191..1281852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS06460 (ABD409_06435) - 1271214..1271489 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  ABD409_RS06465 (ABD409_06440) - 1271588..1272175 (-) 588 WP_002989129.1 YpmS family protein -
  ABD409_RS06470 (ABD409_06445) - 1272153..1272995 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  ABD409_RS06475 (ABD409_06450) - 1272988..1273827 (-) 840 WP_002989125.1 DegV family protein -
  ABD409_RS06480 (ABD409_06455) - 1274054..1275019 (-) 966 WP_369324847.1 LPXTG cell wall anchor domain-containing protein -
  ABD409_RS06485 (ABD409_06460) recN 1275191..1276852 (-) 1662 WP_002989120.1 DNA repair protein RecN Machinery gene
  ABD409_RS06490 (ABD409_06465) - 1276873..1277343 (-) 471 WP_002983907.1 arginine repressor -
  ABD409_RS06495 (ABD409_06470) - 1277330..1278157 (-) 828 WP_011054705.1 TlyA family RNA methyltransferase -
  ABD409_RS06500 (ABD409_06475) - 1278150..1279022 (-) 873 WP_002992347.1 polyprenyl synthetase family protein -
  ABD409_RS06505 (ABD409_06480) - 1279022..1279237 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  ABD409_RS06510 (ABD409_06485) xseA 1279215..1280555 (-) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  ABD409_RS06515 (ABD409_06490) - 1280708..1281562 (-) 855 WP_002989114.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62187.34 Da        Isoelectric Point: 4.5840

>NTDB_id=898745 ABD409_RS06485 WP_002989120.1 1275191..1276852(-) (recN) [Streptococcus pyogenes strain 400/03]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLEAELKSLEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=898745 ABD409_RS06485 WP_002989120.1 1275191..1276852(-) (recN) [Streptococcus pyogenes strain 400/03]
ATGTTATTAGAAATTTCCATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATTATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGAGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAAGAACATAAAGA
TCGTATCGACATGTTGGCTTTTCAGATAGCGGAGATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAAGCTTGGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452