Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R5022_RS16520 Genome accession   NZ_CP137514
Coordinates   3527800..3528435 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain HPA0170     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522800..3533435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5022_RS16505 (R5022_16505) - 3523506..3524750 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  R5022_RS16510 (R5022_16510) - 3524838..3525371 (-) 534 WP_033990447.1 DUF2062 domain-containing protein -
  R5022_RS16515 (R5022_16515) comA 3525502..3527727 (+) 2226 WP_058147062.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R5022_RS16520 (R5022_16520) exbB 3527800..3528435 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R5022_RS16525 (R5022_16525) - 3528432..3528872 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  R5022_RS16530 (R5022_16530) lpxK 3528872..3529870 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  R5022_RS16535 (R5022_16535) - 3529908..3530093 (+) 186 WP_003091157.1 Trm112 family protein -
  R5022_RS16540 (R5022_16540) kdsB 3530093..3530857 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R5022_RS16545 (R5022_16545) - 3530857..3531321 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  R5022_RS16550 (R5022_16550) murB 3531318..3532337 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=898728 R5022_RS16520 WP_003091163.1 3527800..3528435(+) (exbB) [Pseudomonas aeruginosa strain HPA0170]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=898728 R5022_RS16520 WP_003091163.1 3527800..3528435(+) (exbB) [Pseudomonas aeruginosa strain HPA0170]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81