Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   R5031_RS24180 Genome accession   NZ_CP137512
Coordinates   5182489..5183046 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5177489..5188046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5031_RS24165 (R5031_24165) pilY1 5177581..5181072 (-) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  R5031_RS24170 (R5031_24170) pilX 5181084..5181671 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  R5031_RS24175 (R5031_24175) pilW 5181668..5182492 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  R5031_RS24180 (R5031_24180) pilV 5182489..5183046 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  R5031_RS24185 (R5031_24185) - 5183037..5183543 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  R5031_RS24190 (R5031_24190) - 5183649..5184158 (-) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  R5031_RS24195 (R5031_24195) thiO 5184293..5185387 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  R5031_RS24200 (R5031_24200) pilR 5185433..5186770 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=898696 R5031_RS24180 WP_003119423.1 5182489..5183046(-) (pilV) [Pseudomonas aeruginosa strain HPA0271]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=898696 R5031_RS24180 WP_003119423.1 5182489..5183046(-) (pilV) [Pseudomonas aeruginosa strain HPA0271]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995