Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABD409_RS00260 Genome accession   NZ_CP155741
Coordinates   33560..34315 (+) Length   251 a.a.
NCBI ID   WP_023612099.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 400/03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28560..39315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS00245 - 29935..30216 (-) 282 WP_074375313.1 transposase -
  ABD409_RS00250 (ABD409_00245) pcsB 30963..32159 (+) 1197 WP_023612106.1 peptidoglycan hydrolase PcsB -
  ABD409_RS00255 (ABD409_00250) - 32412..33374 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  ABD409_RS00260 (ABD409_00255) recO 33560..34315 (+) 756 WP_023612099.1 DNA repair protein RecO Machinery gene
  ABD409_RS00265 (ABD409_00260) plsX 34418..35425 (+) 1008 WP_023079035.1 phosphate acyltransferase PlsX -
  ABD409_RS00270 (ABD409_00265) - 35418..35660 (+) 243 WP_002986713.1 phosphopantetheine-binding protein -
  ABD409_RS00275 (ABD409_00270) purC 35811..36515 (+) 705 WP_032465562.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29550.99 Da        Isoelectric Point: 6.9077

>NTDB_id=898679 ABD409_RS00260 WP_023612099.1 33560..34315(+) (recO) [Streptococcus pyogenes strain 400/03]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PFDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=898679 ABD409_RS00260 WP_023612099.1 33560..34315(+) (recO) [Streptococcus pyogenes strain 400/03]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGTTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.558

100

0.606