Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   ABD426_RS08840 Genome accession   NZ_CP155739
Coordinates   1749366..1749845 (-) Length   159 a.a.
NCBI ID   WP_229293986.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 997/08     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744366..1754845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD426_RS08820 (ABD426_08790) - 1744543..1745148 (-) 606 WP_023611858.1 response regulator transcription factor -
  ABD426_RS08825 (ABD426_08795) - 1745129..1746691 (-) 1563 WP_111711150.1 hypothetical protein -
  ABD426_RS08830 (ABD426_08800) - 1746725..1748630 (-) 1906 Protein_1682 FtsX-like permease family protein -
  ABD426_RS08835 (ABD426_08805) - 1748632..1749369 (-) 738 WP_002988104.1 ABC transporter ATP-binding protein -
  ABD426_RS08840 (ABD426_08810) comA/nlmT 1749366..1749845 (-) 480 WP_229293986.1 ATP-binding cassette domain-containing protein Regulator
  ABD426_RS08845 (ABD426_08815) - 1749901..1751526 (-) 1626 WP_050336386.1 DUF4135 domain-containing protein -
  ABD426_RS08850 (ABD426_08820) - 1751609..1751764 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  ABD426_RS08855 (ABD426_08825) lacG 1752267..1753673 (-) 1407 WP_023611830.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18466.08 Da        Isoelectric Point: 6.0020

>NTDB_id=898566 ABD426_RS08840 WP_229293986.1 1749366..1749845(-) (comA/nlmT) [Streptococcus pyogenes strain 997/08]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIMSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEEIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=898566 ABD426_RS08840 WP_229293986.1 1749366..1749845(-) (comA/nlmT) [Streptococcus pyogenes strain 997/08]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCATGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGGAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGAGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.268

93.711

0.377
  rcrQ Streptococcus mutans UA159

39.333

94.34

0.371