Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   R5020_RS12520 Genome accession   NZ_CP137500
Coordinates   2621467..2622024 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain HPA0384     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2616467..2627024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5020_RS12505 (R5020_12505) pilY1 2616559..2620050 (-) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -
  R5020_RS12510 (R5020_12510) pilX 2620062..2620649 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  R5020_RS12515 (R5020_12515) pilW 2620646..2621470 (-) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  R5020_RS12520 (R5020_12520) pilV 2621467..2622024 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  R5020_RS12525 (R5020_12525) - 2622015..2622521 (-) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  R5020_RS12530 (R5020_12530) - 2622627..2623136 (-) 510 WP_015503652.1 GspH/FimT family pseudopilin -
  R5020_RS12535 (R5020_12535) thiO 2623271..2624365 (+) 1095 WP_003094695.1 glycine oxidase ThiO -
  R5020_RS12540 (R5020_12540) pilR 2624411..2625748 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=898515 R5020_RS12520 WP_003094697.1 2621467..2622024(-) (pilV) [Pseudomonas aeruginosa strain HPA0384]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=898515 R5020_RS12520 WP_003094697.1 2621467..2622024(-) (pilV) [Pseudomonas aeruginosa strain HPA0384]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978