Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R5017_RS17265 Genome accession   NZ_CP137498
Coordinates   3625235..3625870 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain HPA0663     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620235..3630870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5017_RS17235 (R5017_17235) murB 3621333..3622352 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  R5017_RS17240 (R5017_17240) - 3622349..3622813 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  R5017_RS17245 (R5017_17245) kdsB 3622813..3623577 (-) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R5017_RS17250 (R5017_17250) - 3623577..3623762 (-) 186 WP_003091157.1 Trm112 family protein -
  R5017_RS17255 (R5017_17255) lpxK 3623800..3624798 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  R5017_RS17260 (R5017_17260) - 3624798..3625238 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  R5017_RS17265 (R5017_17265) exbB 3625235..3625870 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R5017_RS17270 (R5017_17270) comA 3625943..3628168 (-) 2226 WP_033938021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R5017_RS17275 (R5017_17275) - 3628299..3628832 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  R5017_RS17280 (R5017_17280) - 3628920..3630164 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=898483 R5017_RS17265 WP_003091163.1 3625235..3625870(-) (exbB) [Pseudomonas aeruginosa strain HPA0663]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=898483 R5017_RS17265 WP_003091163.1 3625235..3625870(-) (exbB) [Pseudomonas aeruginosa strain HPA0663]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81