Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | LDO79_RS10040 | Genome accession | NZ_AP024984 |
| Coordinates | 1843391..1843699 (+) | Length | 102 a.a. |
| NCBI ID | WP_024119555.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain JCM10941 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1838391..1848699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO79_RS10010 (JCM10941_19440) | - | 1839472..1839936 (+) | 465 | WP_011229049.1 | hypothetical protein | - |
| LDO79_RS10015 (JCM10941_19450) | pfkA | 1839913..1840881 (-) | 969 | WP_011173968.1 | 6-phosphofructokinase | - |
| LDO79_RS10020 (JCM10941_19460) | rsmI | 1840878..1841672 (-) | 795 | WP_011229050.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LDO79_RS10025 (JCM10941_19470) | - | 1841674..1842168 (-) | 495 | WP_011229051.1 | hypothetical protein | - |
| LDO79_RS10030 (JCM10941_19480) | - | 1842232..1842759 (-) | 528 | WP_011173971.1 | inorganic diphosphatase | - |
| LDO79_RS10035 (JCM10941_19490) | - | 1842792..1843418 (+) | 627 | WP_011173972.1 | YcxB family protein | - |
| LDO79_RS10040 (JCM10941_19500) | comEA | 1843391..1843699 (+) | 309 | WP_024119555.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| LDO79_RS10045 (JCM10941_19510) | comA/comEC | 1843696..1845729 (+) | 2034 | WP_011229052.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| LDO79_RS10050 (JCM10941_19520) | - | 1845717..1846526 (-) | 810 | WP_011229053.1 | ParB/RepB/Spo0J family partition protein | - |
| LDO79_RS10055 (JCM10941_19530) | soj | 1846510..1847259 (-) | 750 | WP_011229054.1 | chromosome-partitioning ATPase Soj | - |
| LDO79_RS10060 (JCM10941_19540) | rsmG | 1847253..1848002 (-) | 750 | WP_143591821.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 10947.23 Da Isoelectric Point: 10.3435
>NTDB_id=89845 LDO79_RS10040 WP_024119555.1 1843391..1843699(+) (comEA) [Thermus thermophilus strain JCM10941]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
Nucleotide
Download Length: 309 bp
>NTDB_id=89845 LDO79_RS10040 WP_024119555.1 1843391..1843699(+) (comEA) [Thermus thermophilus strain JCM10941]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAAGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAAGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Thermus thermophilus HB27 |
100 |
100 |
1 |
| comEA | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.815 |
100 |
0.422 |