Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   LDO79_RS07030 Genome accession   NZ_AP024984
Coordinates   1319312..1320190 (+) Length   292 a.a.
NCBI ID   WP_011228638.1    Uniprot ID   -
Organism   Thermus thermophilus strain JCM10941     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314312..1325190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS07005 (JCM10941_13580) - 1315309..1315800 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  LDO79_RS07010 (JCM10941_13590) - 1315855..1316859 (+) 1005 WP_011173431.1 homoisocitrate dehydrogenase -
  LDO79_RS07015 (JCM10941_13600) pilM 1316995..1318128 (+) 1134 WP_011228636.1 type IV pilus assembly protein PilM Machinery gene
  LDO79_RS07020 (JCM10941_13610) pilN 1318121..1318744 (+) 624 WP_011228637.1 competence protein Machinery gene
  LDO79_RS07025 (JCM10941_13620) pilO 1318734..1319315 (+) 582 WP_011173434.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO79_RS07030 (JCM10941_13630) pilW 1319312..1320190 (+) 879 WP_011228638.1 competence protein Machinery gene
  LDO79_RS07035 (JCM10941_13640) pilQ 1320187..1322460 (+) 2274 WP_011228639.1 secretin N-terminal domain-containing protein Machinery gene
  LDO79_RS07040 (JCM10941_13650) aroC 1322519..1323670 (+) 1152 WP_011228640.1 chorismate synthase -
  LDO79_RS07045 (JCM10941_13660) - 1323695..1324249 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29896.42 Da        Isoelectric Point: 4.6515

>NTDB_id=89839 LDO79_RS07030 WP_011228638.1 1319312..1320190(+) (pilW) [Thermus thermophilus strain JCM10941]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGNVALWYVGLYLPAQVAEAPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAQAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPKVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLSLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=89839 LDO79_RS07030 WP_011228638.1 1319312..1320190(+) (pilW) [Thermus thermophilus strain JCM10941]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGAACGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCCGCCCAAGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
CAAGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAGCCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

98.63

100

0.986

Multiple sequence alignment