Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | LDO79_RS07020 | Genome accession | NZ_AP024984 |
| Coordinates | 1318121..1318744 (+) | Length | 207 a.a. |
| NCBI ID | WP_011228637.1 | Uniprot ID | A0A3P4AP50 |
| Organism | Thermus thermophilus strain JCM10941 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1313121..1323744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO79_RS07000 (JCM10941_13570) | - | 1313852..1315258 (+) | 1407 | WP_011228635.1 | HD-GYP domain-containing protein | - |
| LDO79_RS07005 (JCM10941_13580) | - | 1315309..1315800 (+) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| LDO79_RS07010 (JCM10941_13590) | - | 1315855..1316859 (+) | 1005 | WP_011173431.1 | homoisocitrate dehydrogenase | - |
| LDO79_RS07015 (JCM10941_13600) | pilM | 1316995..1318128 (+) | 1134 | WP_011228636.1 | type IV pilus assembly protein PilM | Machinery gene |
| LDO79_RS07020 (JCM10941_13610) | pilN | 1318121..1318744 (+) | 624 | WP_011228637.1 | competence protein | Machinery gene |
| LDO79_RS07025 (JCM10941_13620) | pilO | 1318734..1319315 (+) | 582 | WP_011173434.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LDO79_RS07030 (JCM10941_13630) | pilW | 1319312..1320190 (+) | 879 | WP_011228638.1 | competence protein | Machinery gene |
| LDO79_RS07035 (JCM10941_13640) | pilQ | 1320187..1322460 (+) | 2274 | WP_011228639.1 | secretin N-terminal domain-containing protein | Machinery gene |
| LDO79_RS07040 (JCM10941_13650) | aroC | 1322519..1323670 (+) | 1152 | WP_011228640.1 | chorismate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23063.56 Da Isoelectric Point: 9.7530
>NTDB_id=89837 LDO79_RS07020 WP_011228637.1 1318121..1318744(+) (pilN) [Thermus thermophilus strain JCM10941]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
Nucleotide
Download Length: 624 bp
>NTDB_id=89837 LDO79_RS07020 WP_011228637.1 1318121..1318744(+) (pilN) [Thermus thermophilus strain JCM10941]
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
99.517 |
100 |
0.995 |