Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA1 | Type | Machinery gene |
| Locus tag | LDO79_RS06200 | Genome accession | NZ_AP024984 |
| Coordinates | 1159145..1159615 (+) | Length | 156 a.a. |
| NCBI ID | WP_011228522.1 | Uniprot ID | Q5SIZ8 |
| Organism | Thermus thermophilus strain JCM10941 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1154145..1164615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO79_RS06180 (JCM10941_11970) | ilvC | 1154645..1155658 (-) | 1014 | WP_011173279.1 | ketol-acid reductoisomerase | - |
| LDO79_RS06185 (JCM10941_11980) | ilvN | 1155655..1156167 (-) | 513 | WP_011173280.1 | acetolactate synthase small subunit | - |
| LDO79_RS06190 (JCM10941_11990) | ilvB | 1156164..1157852 (-) | 1689 | WP_011228519.1 | biosynthetic-type acetolactate synthase large subunit | - |
| LDO79_RS06195 (JCM10941_12000) | - | 1158007..1158987 (-) | 981 | WP_011228521.1 | YpdA family putative bacillithiol disulfide reductase | - |
| LDO79_RS06200 (JCM10941_12010) | pilA/pilA1 | 1159145..1159615 (+) | 471 | WP_011228522.1 | GspH/FimT family protein | Machinery gene |
| LDO79_RS06205 (JCM10941_12020) | - | 1159700..1160137 (+) | 438 | WP_231834457.1 | GspH/FimT family protein | - |
| LDO79_RS06210 (JCM10941_12030) | - | 1160163..1160495 (+) | 333 | WP_224065211.1 | prepilin | - |
| LDO79_RS06215 (JCM10941_12040) | - | 1160492..1161202 (+) | 711 | WP_011228525.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LDO79_RS06220 (JCM10941_12050) | - | 1161216..1162715 (+) | 1500 | WP_011228526.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| LDO79_RS06225 (JCM10941_12060) | - | 1162988..1163356 (+) | 369 | WP_011228527.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LDO79_RS06230 (JCM10941_12070) | - | 1163415..1163786 (+) | 372 | WP_011228528.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 16937.73 Da Isoelectric Point: 11.7108
>NTDB_id=89835 LDO79_RS06200 WP_011228522.1 1159145..1159615(+) (pilA/pilA1) [Thermus thermophilus strain JCM10941]
MTRRGLTLLELLLVLGILGVFLGLALPLLSPNRLALDQAARSLATQVTRARLEAIRRNAFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATRFGQGNWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLVLTSGGATRKVVISQQGRARLE
MTRRGLTLLELLLVLGILGVFLGLALPLLSPNRLALDQAARSLATQVTRARLEAIRRNAFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATRFGQGNWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLVLTSGGATRKVVISQQGRARLE
Nucleotide
Download Length: 471 bp
>NTDB_id=89835 LDO79_RS06200 WP_011228522.1 1159145..1159615(+) (pilA/pilA1) [Thermus thermophilus strain JCM10941]
ATGACTCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCATCCTGGGGGTCTTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCACCCAGGTGACCCGGGCAAGGCTCGAGG
CCATCCGCCGGAACGCCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACCTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCGCTTCGGCCAAGGGAACTGGGCCCGAGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCCCTCCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACGC
TCGTCCTCACCTCAGGGGGCGCCACCCGCAAGGTGGTCATCTCCCAGCAGGGCCGGGCCCGCCTGGAGTGA
ATGACTCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCATCCTGGGGGTCTTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCACCCAGGTGACCCGGGCAAGGCTCGAGG
CCATCCGCCGGAACGCCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACCTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCGCTTCGGCCAAGGGAACTGGGCCCGAGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCCCTCCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACGC
TCGTCCTCACCTCAGGGGGCGCCACCCGCAAGGTGGTCATCTCCCAGCAGGGCCGGGCCCGCCTGGAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA1 | Thermus thermophilus HB27 |
98.718 |
100 |
0.987 |