Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R4T22_RS16090 Genome accession   NZ_CP137485
Coordinates   3164411..3165025 (-) Length   204 a.a.
NCBI ID   WP_008784288.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain F2221     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3159411..3170025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4T22_RS16075 (R4T22_16075) helD 3159635..3161689 (-) 2055 WP_020996509.1 DNA helicase IV -
  R4T22_RS16080 (R4T22_16080) - 3161815..3162261 (+) 447 WP_003831998.1 YccF domain-containing protein -
  R4T22_RS16085 (R4T22_16085) yccS 3162280..3164433 (+) 2154 WP_008784289.1 YccS family putative transporter -
  R4T22_RS16090 (R4T22_16090) sxy/tfoX 3164411..3165025 (-) 615 WP_008784288.1 TfoX/Sxy family DNA transformation protein Regulator
  R4T22_RS16095 (R4T22_16095) sulA 3165243..3165752 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  R4T22_RS16100 (R4T22_16100) ompA 3166110..3167156 (+) 1047 WP_020996510.1 porin OmpA -
  R4T22_RS16105 (R4T22_16105) matP 3167245..3167697 (-) 453 WP_008784285.1 macrodomain Ter protein MatP -
  R4T22_RS16110 (R4T22_16110) - 3167883..3169643 (+) 1761 WP_008784284.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23153.57 Da        Isoelectric Point: 8.6049

>NTDB_id=898253 R4T22_RS16090 WP_008784288.1 3164411..3165025(-) (sxy/tfoX) [Citrobacter portucalensis strain F2221]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFALHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=898253 R4T22_RS16090 WP_008784288.1 3164411..3165025(-) (sxy/tfoX) [Citrobacter portucalensis strain F2221]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCTGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCGCAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTAGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676