Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R5U37_RS11605 Genome accession   NZ_CP137476
Coordinates   2343102..2344472 (-) Length   456 a.a.
NCBI ID   WP_123838493.1    Uniprot ID   -
Organism   Enterococcus faecium strain HMC8C-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2338102..2349472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5U37_RS11590 (R5U37_11610) epsC 2339423..2339959 (-) 537 WP_002287446.1 serine O-acetyltransferase EpsC -
  R5U37_RS11595 (R5U37_11615) gltX 2340281..2341741 (-) 1461 WP_002293095.1 glutamate--tRNA ligase -
  R5U37_RS11600 (R5U37_11620) - 2341911..2343068 (-) 1158 WP_002287448.1 PIN/TRAM domain-containing protein -
  R5U37_RS11605 (R5U37_11625) radA 2343102..2344472 (-) 1371 WP_123838493.1 DNA repair protein RadA Machinery gene
  R5U37_RS11610 (R5U37_11630) - 2344535..2345062 (-) 528 WP_002287450.1 dUTP diphosphatase -
  R5U37_RS11615 (R5U37_11635) proB 2345292..2346098 (+) 807 WP_002324460.1 glutamate 5-kinase -
  R5U37_RS11620 (R5U37_11640) - 2346095..2347342 (+) 1248 WP_123838492.1 glutamate-5-semialdehyde dehydrogenase -
  R5U37_RS11625 (R5U37_11645) - 2347418..2347762 (+) 345 WP_002324458.1 hypothetical protein -
  R5U37_RS11630 (R5U37_11650) - 2348017..2348337 (-) 321 WP_002324457.1 hypothetical protein -
  R5U37_RS11635 (R5U37_11655) - 2348462..2348800 (-) 339 Protein_2197 alcohol dehydrogenase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50051.72 Da        Isoelectric Point: 7.4238

>NTDB_id=898214 R5U37_RS11605 WP_123838493.1 2343102..2344472(-) (radA) [Enterococcus faecium strain HMC8C-1]
MAKKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTTDRRTRTSLTGEKAKPTKIADVVPKKEPRIKTKLEELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISR
AIEHISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLDGATGSAIVVTMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGNWEAPKEIEIVGVATLAETLKRVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=898214 R5U37_RS11605 WP_123838493.1 2343102..2344472(-) (radA) [Enterococcus faecium strain HMC8C-1]
ATGGCAAAAAAATCAAAAGTACAATTTGTTTGCCAAAATTGCGGGTATGTGTCGCCTAAGTTCTTGGGACGCTGCCCAAA
TTGCGGAAAATGGAATACGATGGTCGAAGAAATCGAACAAGATACAACGGACCGCAGAACTCGGACAAGTTTGACAGGAG
AAAAAGCAAAACCAACAAAAATCGCAGACGTCGTCCCTAAAAAAGAACCTCGGATCAAAACAAAATTAGAAGAACTGAAC
CGTGTGTTAGGCGGAGGTGTGGTGCCAGGGTCTATGGTCTTGATTGGTGGCGATCCAGGTATCGGGAAATCCACTTTGCT
GTTACAAGTTTCTCAGCAATTAGCAGCCATAGGCGGAAAAGTTTTATATGTATCCGGCGAAGAAAGCGCAGAGCAGATAA
AATTACGCGCGGAACGCCTCGGAAGTATCAACACAGAATTTTATCTATACGCTGAAACAGATATGAACGAAATCAGTCGT
GCCATCGAACATATCTCCCCTGATTATGTTATCATTGATTCCATCCAAACGATGACGCAGCCAGACATCACAAGTGTGGC
AGGAAGTGTCAGCCAAGTAAGAGAAACCACTGCAGAACTACTCAAAATCGCTAAAACAAATGGGATAGCCATTTTTATCG
TCGGTCATGTTACCAAAGAAGGCTCGATCGCCGGCCCAAGAATGTTAGAACATATGGTGGATACGGTGTTATATTTTGAA
GGTGAACAACATCATAGTTTTCGGATTTTGCGAGCAGTAAAAAACCGATTTGGCTCAACGAATGAGATTGGGATTTTTGA
AATGCATGAGCATGGATTGGAAGAAGTCGCTAATCCTTCACAGATTTTCTTAGAAGAACGCCTAGACGGTGCAACTGGCT
CTGCTATCGTTGTGACAATGGAAGGGACACGTCCAATTTTGGTAGAGATCCAAGCATTAGTCACACCTACTATGTTCGGA
AATGCCAAACGAACAACAACAGGTCTTGATTTCAATCGGGTATCTCTGATCATGGCAGTGCTGGAAAAAAGAGCTGGGTT
GCTTCTTCAGAATCAAGATGCTTACTTAAAAGCTGCAGGTGGGGTAAAATTAAATGAACCAGCGATTGATTTAGCTATCG
CTGTCAGTATTGCTTCAAGCTATAAAGAAAAAGGAACACAGCCAACGGAATGTTTCATCGGTGAAATTGGACTGACTGGA
GAAATCAGACGTGTCAGTCATATTGAACAACGAGTCAAAGAAGTCCAAAAACTCGGCTTCACAAAAGTATACCTACCTAA
AAACAACTTAGGTAACTGGGAAGCGCCAAAAGAAATCGAGATAGTTGGAGTAGCAACTTTGGCTGAAACGTTGAAGCGTG
TGTTCCGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus pneumoniae Rx1

74.725

99.781

0.746
  radA Streptococcus pneumoniae D39

74.725

99.781

0.746
  radA Streptococcus pneumoniae R6

74.725

99.781

0.746
  radA Streptococcus pneumoniae TIGR4

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664