Detailed information NTG0089806

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M2Z51_RS11625
• Genome accession: NZ_AP024967
• Coordinates: 2583005..2584012 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116733.1
• Uniprot ID: A0AAW4H1Y0
• Organism: Vibrio cholerae strain V130003
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2578005..2589012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2Z51_RS11615 (V130003_23120)	cysM	2579168..2580055 (+)	888	WP_001279364.1	cysteine synthase CysM	-
M2Z51_RS11620 (V130003_23130)	mutS	2580323..2582911 (+)	2589	WP_032477068.1	DNA mismatch repair protein MutS	-
M2Z51_RS11625 (V130003_23140)	rpoS	2583005..2584012 (-)	1008	WP_000116733.1	RNA polymerase sigma factor RpoS	Regulator
M2Z51_RS11630 (V130003_23150)	-	2584086..2585020 (-)	935	Protein_2252	peptidoglycan DD-metalloendopeptidase family protein	-
M2Z51_RS11635 (V130003_23170)	-	2585020..2585646 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M2Z51_RS11640 (V130003_23180)	surE	2585639..2586391 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
M2Z51_RS11645 (V130003_23190)	truD	2586393..2587478 (-)	1086	WP_032477064.1	tRNA pseudouridine(13) synthase TruD	-
M2Z51_RS11650 (V130003_23200)	ispF	2587508..2587984 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M2Z51_RS11655 (V130003_23210)	ispD	2587981..2588679 (-)	699	WP_001061953.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
M2Z51_RS11660 (V130003_23220)	ftsB	2588676..2588960 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38476.31 Da
• Isoelectric Point: 4.3648

>NTDB_id=89806 M2Z51_RS11625 WP_000116733.1 2583005..2584012(-) (rpoS) [Vibrio cholerae strain V130003]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDAREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=89806 M2Z51_RS11625 WP_000116733.1 2583005..2584012(-) (rpoS) [Vibrio cholerae strain V130003]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGATGCTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGCCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGCGATGAAGCCGCACGCAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAGGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCTATCCATGTCGTCAAAGAGCTGAATATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994