Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M2Z51_RS08115 Genome accession   NZ_AP024967
Coordinates   1807384..1808808 (+) Length   474 a.a.
NCBI ID   WP_001183692.1    Uniprot ID   A0A544H367
Organism   Vibrio cholerae strain V130003     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802384..1813808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS08095 (V130003_16170) - 1802652..1803437 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  M2Z51_RS08100 (V130003_16180) cobT 1803437..1804462 (-) 1026 WP_000887075.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  M2Z51_RS08105 (V130003_16190) msrB 1805073..1805519 (-) 447 WP_032476236.1 peptide-methionine (R)-S-oxide reductase MsrB -
  M2Z51_RS08110 (V130003_16200) - 1805867..1807240 (+) 1374 WP_000117950.1 L-cystine transporter -
  M2Z51_RS08115 (V130003_16210) sbcB 1807384..1808808 (+) 1425 WP_001183692.1 exodeoxyribonuclease I Machinery gene
  M2Z51_RS08120 (V130003_16220) - 1808840..1809214 (+) 375 WP_032476262.1 CidA/LrgA family protein -
  M2Z51_RS08125 (V130003_16230) - 1809205..1809879 (+) 675 WP_000266239.1 LrgB family protein -
  M2Z51_RS08130 (V130003_16240) cdd 1810049..1810936 (+) 888 WP_001245905.1 cytidine deaminase -
  M2Z51_RS08135 (V130003_16250) - 1811095..1811970 (+) 876 WP_000462870.1 AEC family transporter -
  M2Z51_RS08140 (V130003_16260) purT 1812124..1813299 (+) 1176 WP_001959616.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54500.86 Da        Isoelectric Point: 5.9820

>NTDB_id=89796 M2Z51_RS08115 WP_001183692.1 1807384..1808808(+) (sbcB) [Vibrio cholerae strain V130003]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=89796 M2Z51_RS08115 WP_001183692.1 1807384..1808808(+) (sbcB) [Vibrio cholerae strain V130003]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A544H367

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.156

100

0.992

Multiple sequence alignment