Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABDZ21_RS16165 Genome accession   NZ_CP155721
Coordinates   3359027..3359389 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 2024CK-00246     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3354027..3364389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ21_RS16155 (ABDZ21_16155) - 3356305..3358383 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  ABDZ21_RS16160 (ABDZ21_16160) - 3358430..3358966 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  ABDZ21_RS16165 (ABDZ21_16165) pilH 3359027..3359389 (-) 363 WP_000101096.1 response regulator Machinery gene
  ABDZ21_RS16170 (ABDZ21_16170) pilG 3359413..3359796 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ABDZ21_RS16175 (ABDZ21_16175) - 3360079..3360717 (+) 639 WP_031980986.1 hypothetical protein -
  ABDZ21_RS16180 (ABDZ21_16180) - 3360777..3361895 (+) 1119 WP_024432177.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=897783 ABDZ21_RS16165 WP_000101096.1 3359027..3359389(-) (pilH) [Acinetobacter baumannii strain 2024CK-00246]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=897783 ABDZ21_RS16165 WP_000101096.1 3359027..3359389(-) (pilH) [Acinetobacter baumannii strain 2024CK-00246]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392