Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABDZ21_RS01515 Genome accession   NZ_CP155721
Coordinates   312134..312460 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain 2024CK-00246     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 307134..317460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ21_RS01490 (ABDZ21_01490) - 307353..308192 (+) 840 WP_001230201.1 hypothetical protein -
  ABDZ21_RS01495 (ABDZ21_01495) - 308202..309395 (+) 1194 WP_000681774.1 hypothetical protein -
  ABDZ21_RS01500 (ABDZ21_01500) - 309403..309843 (+) 441 WP_024432422.1 thioesterase family protein -
  ABDZ21_RS01505 (ABDZ21_01505) - 309923..310855 (-) 933 WP_001040033.1 IS5 family transposase -
  ABDZ21_RS01510 (ABDZ21_01510) - 311112..312044 (-) 933 WP_001040033.1 IS5 family transposase -
  ABDZ21_RS01515 (ABDZ21_01515) hns 312134..312460 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  ABDZ21_RS01520 (ABDZ21_01520) gspN 312791..313534 (+) 744 WP_000730343.1 type II secretion system protein N -
  ABDZ21_RS01525 (ABDZ21_01525) - 313534..314370 (+) 837 WP_000870031.1 type II secretion system protein N -
  ABDZ21_RS01530 (ABDZ21_01530) gspD 314412..316688 (+) 2277 WP_001196437.1 type II secretion system secretin GspD -
  ABDZ21_RS01535 (ABDZ21_01535) - 316729..317358 (+) 630 WP_000219974.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=897739 ABDZ21_RS01515 WP_000801427.1 312134..312460(+) (hns) [Acinetobacter baumannii strain 2024CK-00246]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=897739 ABDZ21_RS01515 WP_000801427.1 312134..312460(+) (hns) [Acinetobacter baumannii strain 2024CK-00246]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1