Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ABEG12_RS09655 Genome accession   NZ_CP155639
Coordinates   2034808..2035137 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TY922     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2029808..2040137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG12_RS09640 (ABEG12_09640) - 2030508..2031467 (+) 960 WP_073657243.1 SDR family oxidoreductase -
  ABEG12_RS09645 (ABEG12_09645) - 2031464..2032489 (+) 1026 WP_009313766.1 glycosyltransferase family 4 protein -
  ABEG12_RS09650 (ABEG12_09650) - 2032620..2034617 (+) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ABEG12_RS09655 (ABEG12_09655) comEA/comE1 2034808..2035137 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  ABEG12_RS09665 (ABEG12_09665) - 2035354..2036550 (-) 1197 WP_033996105.1 amino acid aminotransferase -
  ABEG12_RS09670 (ABEG12_09670) uvrB 2036738..2038750 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=897651 ABEG12_RS09655 WP_003091430.1 2034808..2035137(+) (comEA/comE1) [Pseudomonas aeruginosa strain TY922]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=897651 ABEG12_RS09655 WP_003091430.1 2034808..2035137(+) (comEA/comE1) [Pseudomonas aeruginosa strain TY922]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385