Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   OHP008_RS07785 Genome accession   NZ_AP024965
Coordinates   1614959..1616272 (-) Length   437 a.a.
NCBI ID   WP_223888330.1    Uniprot ID   -
Organism   Helicobacter pylori strain #8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609959..1621272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP008_RS07750 (OHP008_15450) - 1610269..1610397 (-) 129 Protein_1514 adenine methyltransferase -
  OHP008_RS07755 (OHP008_15460) nadC 1610422..1611243 (-) 822 WP_223888325.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OHP008_RS07760 (OHP008_15470) nadA 1611243..1612253 (-) 1011 WP_223888326.1 quinolinate synthase NadA -
  OHP008_RS07765 (OHP008_15480) - 1612243..1613046 (-) 804 WP_223888327.1 phosphatidylserine decarboxylase -
  OHP008_RS07770 (OHP008_15490) - 1613043..1613546 (-) 504 WP_212791075.1 DUF6115 domain-containing protein -
  OHP008_RS07775 (OHP008_15500) - 1613559..1614053 (-) 495 WP_223888328.1 hypothetical protein -
  OHP008_RS07780 (OHP008_15510) mqnP 1614046..1614930 (-) 885 WP_223888329.1 menaquinone biosynthesis prenyltransferase MqnP -
  OHP008_RS07785 (OHP008_15520) comEC/comE3 1614959..1616272 (-) 1314 WP_223888330.1 ComEC/Rec2 family competence protein Machinery gene
  OHP008_RS07790 (OHP008_15530) - 1616269..1617735 (-) 1467 WP_223888331.1 replicative DNA helicase -
  OHP008_RS07795 (OHP008_15540) - 1617746..1619146 (-) 1401 WP_223888332.1 NAD(P)H-hydrate dehydratase -
  OHP008_RS07800 (OHP008_15550) crdS 1619149..1620351 (-) 1203 WP_223888794.1 copper-sensing histidine kinase CrdS -
  OHP008_RS07805 (OHP008_15560) crdR 1620317..1620958 (-) 642 WP_180585333.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50171.18 Da        Isoelectric Point: 9.9445

>NTDB_id=89763 OHP008_RS07785 WP_223888330.1 1614959..1616272(-) (comEC/comE3) [Helicobacter pylori strain #8]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHVRRFIDSAHSSTLVGNLYRALFIGDSL
NKDLRNRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=89763 OHP008_RS07785 WP_223888330.1 1614959..1616272(-) (comEC/comE3) [Helicobacter pylori strain #8]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACTACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGACAGCGCTCATTCAAGCACTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAAATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938

Multiple sequence alignment