Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R5H20_RS19865 Genome accession   NZ_CP137345
Coordinates   3871313..3871597 (-) Length   94 a.a.
NCBI ID   WP_006639122.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3866313..3876597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS19845 (R5H20_19845) smpB 3867152..3867625 (-) 474 WP_006639118.1 SsrA-binding protein -
  R5H20_RS19850 (R5H20_19850) rnr 3867738..3870032 (-) 2295 WP_006639119.1 ribonuclease R -
  R5H20_RS19855 (R5H20_19855) - 3870046..3870792 (-) 747 WP_006639120.1 alpha/beta hydrolase -
  R5H20_RS19860 (R5H20_19860) secG 3870923..3871153 (-) 231 WP_006639121.1 preprotein translocase subunit SecG -
  R5H20_RS19865 (R5H20_19865) abrB 3871313..3871597 (-) 285 WP_006639122.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  R5H20_RS19870 (R5H20_19870) - 3871627..3871857 (-) 231 WP_006639123.1 helix-turn-helix domain-containing protein -
  R5H20_RS19875 (R5H20_19875) - 3872013..3872417 (+) 405 WP_006639124.1 helix-turn-helix domain-containing protein -
  R5H20_RS19880 (R5H20_19880) - 3872570..3872968 (+) 399 WP_029419541.1 helix-turn-helix domain-containing protein -
  R5H20_RS19885 (R5H20_19885) - 3873012..3873689 (-) 678 WP_006639126.1 ABC transporter permease -
  R5H20_RS19890 (R5H20_19890) opuCC 3873708..3874625 (-) 918 WP_006639127.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  R5H20_RS19895 (R5H20_19895) - 3874639..3875292 (-) 654 WP_006639128.1 ABC transporter permease -
  R5H20_RS19900 (R5H20_19900) - 3875309..3876451 (-) 1143 WP_006639129.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10487.30 Da        Isoelectric Point: 7.9636

>NTDB_id=897612 R5H20_RS19865 WP_006639122.1 3871313..3871597(-) (abrB) [Bacillus sp. KICET-3]
MKNTGIVRRIDELGRVVLPVELRRVLNIKEKDPLEIYSDGDNIILAKYAANMACLMTGEITTQNKTYAGGKIILSPRGAE
MLLEDLLEALSNRK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=897612 R5H20_RS19865 WP_006639122.1 3871313..3871597(-) (abrB) [Bacillus sp. KICET-3]
ATGAAGAATACCGGAATTGTAAGAAGAATCGATGAGCTTGGCCGGGTGGTCCTGCCGGTGGAACTGAGAAGGGTGCTGAA
TATCAAGGAAAAAGATCCGCTTGAAATTTACAGCGACGGCGACAATATCATTCTTGCCAAATATGCAGCAAACATGGCCT
GTCTGATGACCGGTGAAATCACGACACAGAACAAAACGTACGCAGGCGGCAAAATCATCCTCAGCCCGCGCGGCGCCGAA
ATGCTTTTGGAAGATTTGCTGGAGGCCTTGTCCAACAGGAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-86)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

100

0.564