Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   R5H20_RS16680 Genome accession   NZ_CP137345
Coordinates   3263653..3264387 (-) Length   244 a.a.
NCBI ID   WP_006637859.1    Uniprot ID   M5P6X3
Organism   Bacillus sp. KICET-3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258653..3269387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS16655 (R5H20_16655) mreC 3258935..3259843 (-) 909 WP_006637854.1 rod shape-determining protein MreC -
  R5H20_RS16660 (R5H20_16660) - 3259874..3260884 (-) 1011 WP_006637855.1 rod shape-determining protein -
  R5H20_RS16665 (R5H20_16665) radC 3260972..3261646 (-) 675 WP_006637856.1 RadC family protein -
  R5H20_RS16670 (R5H20_16670) - 3261701..3262273 (-) 573 WP_006637857.1 Maf family protein -
  R5H20_RS16675 (R5H20_16675) - 3262424..3263455 (-) 1032 WP_006637858.1 SPOR domain-containing protein -
  R5H20_RS16680 (R5H20_16680) comC 3263653..3264387 (-) 735 WP_006637859.1 prepilin peptidase Machinery gene
  R5H20_RS16685 (R5H20_16685) - 3264535..3265833 (-) 1299 WP_006637860.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  R5H20_RS16690 (R5H20_16690) - 3265908..3268550 (-) 2643 WP_006637861.1 valine--tRNA ligase -
  R5H20_RS16695 (R5H20_16695) - 3269005..3269196 (+) 192 WP_006637862.1 hypothetical protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26217.92 Da        Isoelectric Point: 8.7885

>NTDB_id=897602 R5H20_RS16680 WP_006637859.1 3263653..3264387(-) (comC) [Bacillus sp. KICET-3]
MYLFIFGLVLGSFFNVAGRRIPENTSLIAPRSACPDCCRPLTFLELIPVLSYILQRGKCRGCKRPVSIVYPAVELAAALL
FAFAYLRIGDPGELVIALFLISLLLIVFVSDVMYMVIPDAVLCFFLPVFAAGRILFPLEPWHSSLTGAIAGCLLPLVAAV
MTKGGIGGGDVKLFAVLGIVLGVRQILLVFVLSAAAGMVMGFAAMLAGKLKRREPLPFAPAILIGTLTGYFYGDPLIGLY
IQMI

Nucleotide


Download         Length: 735 bp        

>NTDB_id=897602 R5H20_RS16680 WP_006637859.1 3263653..3264387(-) (comC) [Bacillus sp. KICET-3]
ATGTATTTATTTATATTCGGTTTAGTGCTCGGTTCTTTTTTTAATGTGGCCGGCCGCCGCATACCCGAGAACACCTCTTT
GATCGCTCCCCGCTCCGCCTGCCCTGACTGCTGCCGCCCGCTCACTTTTCTTGAACTGATTCCGGTGTTGTCCTATATAT
TGCAGAGGGGAAAATGCAGGGGATGCAAACGGCCTGTTTCCATCGTGTATCCGGCCGTTGAGCTTGCGGCGGCATTGCTG
TTTGCCTTTGCCTATTTAAGGATTGGCGATCCCGGAGAGCTTGTCATCGCGCTTTTCCTCATTTCTTTATTGCTTATCGT
GTTTGTCTCAGATGTGATGTATATGGTCATACCTGATGCCGTCCTTTGTTTTTTTCTGCCTGTTTTTGCCGCCGGGCGCA
TCCTGTTCCCGCTTGAGCCTTGGCATTCAAGCTTAACTGGAGCGATTGCCGGTTGTCTGCTGCCGCTTGTTGCGGCTGTG
ATGACGAAAGGCGGCATCGGCGGGGGAGATGTAAAGCTGTTTGCCGTTCTTGGCATCGTCCTCGGGGTTCGCCAGATTTT
GCTCGTATTCGTTCTGTCTGCGGCTGCCGGAATGGTGATGGGTTTCGCGGCGATGCTGGCTGGGAAGCTAAAACGAAGAG
AGCCATTGCCATTTGCGCCCGCCATTTTGATCGGAACATTGACAGGCTATTTTTATGGCGACCCGCTGATCGGCTTATAC
ATTCAGATGATATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(5-87)

Type IV leader peptidase family (Peptidase_A24)

(98-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P6X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

53.112

98.77

0.525