Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R5H20_RS15310 Genome accession   NZ_CP137345
Coordinates   3008266..3009036 (-) Length   256 a.a.
NCBI ID   WP_006637599.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3003266..3014036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS15290 (R5H20_15290) - 3003329..3004141 (-) 813 WP_006637595.1 pyruvate, water dikinase regulatory protein -
  R5H20_RS15295 (R5H20_15295) - 3004165..3004803 (-) 639 WP_006637596.1 helix-turn-helix transcriptional regulator -
  R5H20_RS15300 (R5H20_15300) glyS 3005010..3007049 (-) 2040 WP_006637597.1 glycine--tRNA ligase subunit beta -
  R5H20_RS15305 (R5H20_15305) glyQ 3007042..3007929 (-) 888 WP_006637598.1 glycine--tRNA ligase subunit alpha -
  R5H20_RS15310 (R5H20_15310) recO 3008266..3009036 (-) 771 WP_006637599.1 DNA repair protein RecO Machinery gene
  R5H20_RS15315 (R5H20_15315) - 3009075..3009218 (-) 144 WP_006637600.1 YqzL family protein -
  R5H20_RS15320 (R5H20_15320) era 3009379..3010284 (-) 906 WP_006637601.1 GTPase Era -
  R5H20_RS15325 (R5H20_15325) - 3010265..3010717 (-) 453 WP_236835380.1 cytidine deaminase -
  R5H20_RS15330 (R5H20_15330) - 3010815..3011195 (-) 381 WP_006637603.1 diacylglycerol kinase family protein -
  R5H20_RS15335 (R5H20_15335) ybeY 3011173..3011649 (-) 477 WP_006637604.1 rRNA maturation RNase YbeY -
  R5H20_RS15340 (R5H20_15340) - 3011646..3013736 (-) 2091 WP_051056678.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29407.16 Da        Isoelectric Point: 9.2713

>NTDB_id=897595 R5H20_RS15310 WP_006637599.1 3008266..3009036(-) (recO) [Bacillus sp. KICET-3]
MLTKCEGIVLRTNDYGETNKILTILTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMLESMRN
IREDLFLTAHAAYIAELVDKGTDEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLGVIGLYPELNECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRVPMSPASARLLRLLFYFDLSRLGNVSVKRETKEELKRVIQLYYDEYSGIFLKSRRFM
EQMDNMKKMLGNENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=897595 R5H20_RS15310 WP_006637599.1 3008266..3009036(-) (recO) [Bacillus sp. KICET-3]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACGAACGATTATGGTGAAACCAATAAAATTTTGACAATTTTGACAAG
GGAGCATGGGAAAATCGGTGTACTGGCAAGAGGCGCAAAAAAACCGAACAGCCGCTTGTCGGCTATTTCCCAGCCCTTTC
TCTACGCTTCGTTTTTATTTCGGAAATCGTCCGGACTCGGTACGCTTGAGCAGGGCGAAATGCTTGAAAGCATGCGGAAT
ATTCGCGAGGACCTTTTTTTAACGGCGCATGCCGCTTATATCGCCGAATTGGTTGACAAAGGCACGGATGAAAAGAAACC
GAACCCGTTTTTATTCGAACTGCTTCTTCAATCGATGAGAAGGCTGAATGACGGGACTGATCCGGACATCATTACAAACC
TGATCGAAGTCAAAATGCTCGGCGTAATCGGGCTTTATCCGGAATTAAATGAATGCGTCCATTGCAAGAGCAAAGACGGA
ACATTCCATTTTTCAATCCGCGACAACGGCTTTATATGCCATCGCTGCTTTGCGAAGGACCCTTATCGGGTGCCGATGTC
TCCCGCTTCAGCCAGGCTTTTGAGACTGCTTTTTTATTTTGACCTGTCAAGGCTCGGGAATGTATCGGTAAAACGTGAAA
CAAAGGAAGAGCTGAAAAGAGTCATCCAGCTCTATTATGACGAGTACTCGGGAATTTTTCTGAAATCGCGGCGCTTTATG
GAACAGATGGACAATATGAAAAAAATGCTCGGCAATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77