Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   R5H20_RS10235 Genome accession   NZ_CP137345
Coordinates   2081483..2081989 (+) Length   168 a.a.
NCBI ID   WP_088272936.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076483..2086989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS10210 (R5H20_10210) - 2076980..2077531 (+) 552 WP_157678846.1 SMI1/KNR4 family protein -
  R5H20_RS10215 (R5H20_10215) - 2077703..2079556 (+) 1854 WP_088272940.1 T7SS effector LXG polymorphic toxin -
  R5H20_RS10220 (R5H20_10220) - 2079566..2080093 (+) 528 WP_088272939.1 hypothetical protein -
  R5H20_RS10225 (R5H20_10225) - 2080304..2080759 (+) 456 WP_088272938.1 DUF4274 domain-containing protein -
  R5H20_RS10230 (R5H20_10230) - 2080879..2081343 (+) 465 WP_088272937.1 SMI1/KNR4 family protein -
  R5H20_RS10235 (R5H20_10235) rok 2081483..2081989 (+) 507 WP_088272936.1 transcriptional repressor Rok Regulator
  R5H20_RS10240 (R5H20_10240) - 2082067..2082420 (+) 354 WP_006640234.1 hypothetical protein -
  R5H20_RS10245 (R5H20_10245) - 2082614..2083711 (+) 1098 WP_006640233.1 RapH N-terminal domain-containing protein -
  R5H20_RS10250 (R5H20_10250) - 2083711..2083848 (+) 138 WP_006640232.1 hypothetical protein -
  R5H20_RS10255 (R5H20_10255) - 2084433..2084582 (-) 150 WP_156183647.1 putative holin-like toxin -
  R5H20_RS10260 (R5H20_10260) - 2084709..2085017 (-) 309 WP_006640230.1 hypothetical protein -
  R5H20_RS10265 (R5H20_10265) - 2085036..2085290 (-) 255 WP_006640229.1 phage holin -
  R5H20_RS10270 (R5H20_10270) - 2085309..2085695 (-) 387 WP_006640228.1 hypothetical protein -
  R5H20_RS10275 (R5H20_10275) - 2085827..2086915 (-) 1089 WP_006640227.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19644.49 Da        Isoelectric Point: 10.1604

>NTDB_id=897586 R5H20_RS10235 WP_088272936.1 2081483..2081989(+) (rok) [Bacillus sp. KICET-3]
MFNEREALRLRLEQLKDAEIKIMRELRTERNRIYVKLHELDSQGDSSVTNKKSLIELVSETAKALENNKSNEISSNDSTP
KPRRKPKPGTKAYKHREAALKVLQEHKGEIRSYELQKEIEKETGIPINNMTTFMQGLMKFYPEVEKTYRGRYVLRKSKMN
AMNESPSD

Nucleotide


Download         Length: 507 bp        

>NTDB_id=897586 R5H20_RS10235 WP_088272936.1 2081483..2081989(+) (rok) [Bacillus sp. KICET-3]
ATGTTCAATGAAAGAGAAGCACTCCGATTAAGACTTGAGCAGCTTAAAGATGCTGAAATTAAAATCATGCGCGAACTTCG
AACTGAGCGTAATAGGATTTACGTAAAGTTACATGAATTAGACAGTCAAGGTGATTCATCCGTAACGAATAAAAAATCAT
TAATTGAACTTGTCAGTGAAACTGCAAAAGCCTTAGAAAATAACAAGTCTAATGAAATTTCATCAAATGATTCCACACCA
AAACCAAGAAGAAAGCCTAAACCTGGCACAAAAGCCTATAAGCATCGTGAAGCAGCTTTAAAGGTTTTACAGGAACATAA
AGGTGAAATAAGGAGTTATGAGCTTCAGAAGGAAATTGAAAAAGAAACGGGTATACCAATCAACAATATGACAACTTTTA
TGCAGGGATTGATGAAATTCTATCCGGAAGTTGAAAAGACATATCGCGGTCGATATGTTCTCAGAAAAAGTAAAATGAAC
GCAATGAATGAAAGTCCTTCTGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

46.369

100

0.494