Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   R5H20_RS08225 Genome accession   NZ_CP137345
Coordinates   1622937..1623527 (+) Length   196 a.a.
NCBI ID   WP_006638375.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617937..1628527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS08195 (R5H20_08195) - 1618169..1618621 (+) 453 WP_006638381.1 flavodoxin -
  R5H20_RS08200 (R5H20_08200) dapD 1618798..1619508 (+) 711 WP_006638380.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  R5H20_RS08205 (R5H20_08205) - 1619577..1620701 (+) 1125 WP_006638379.1 N-acetyldiaminopimelate deacetylase -
  R5H20_RS08210 (R5H20_08210) - 1620764..1621009 (+) 246 WP_006638378.1 YkuS family protein -
  R5H20_RS08215 (R5H20_08215) ahpA 1621301..1621843 (+) 543 WP_006638377.1 biofilm-specific peroxidase AhpA -
  R5H20_RS08220 (R5H20_08220) - 1621932..1622390 (+) 459 WP_006638376.1 TlpA family protein disulfide reductase -
  R5H20_RS08225 (R5H20_08225) rok 1622937..1623527 (+) 591 WP_006638375.1 transcriptional regulator Rok Regulator
  R5H20_RS08230 (R5H20_08230) - 1623663..1624619 (-) 957 WP_006638374.1 hypothetical protein -
  R5H20_RS08235 (R5H20_08235) - 1624773..1625360 (+) 588 WP_006638373.1 molybdenum cofactor guanylyltransferase -
  R5H20_RS08240 (R5H20_08240) - 1625479..1626492 (+) 1014 WP_006638372.1 MoeB/ThiF family adenylyltransferase -
  R5H20_RS08245 (R5H20_08245) glp 1626511..1627803 (+) 1293 WP_006638371.1 gephyrin-like molybdotransferase Glp -
  R5H20_RS08250 (R5H20_08250) mobB 1627770..1628306 (+) 537 WP_006638370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22603.50 Da        Isoelectric Point: 9.9960

>NTDB_id=897580 R5H20_RS08225 WP_006638375.1 1622937..1623527(+) (rok) [Bacillus sp. KICET-3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNNDTKKDFRTDRKSESLPVLAELAAQEMKSYQQQ
QQQAQSSQKTQQQTSQQASVLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGDISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=897580 R5H20_RS08225 WP_006638375.1 1622937..1623527(+) (rok) [Bacillus sp. KICET-3]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGTTAAATGAAGCTGAGGTTAAGGTCATTAGGGAGTATCA
GATTGAGCGTGACAATATATATGCAAAGCTGCGTGAATTGGATCGCCCATCCAGCTTTAATAATGATACAAAAAAAGATT
TTCGCACAGACCGAAAAAGCGAATCACTTCCTGTTTTAGCTGAATTAGCTGCACAGGAGATGAAAAGCTACCAGCAGCAA
CAGCAGCAGGCGCAGTCATCTCAAAAAACTCAGCAGCAGACTTCTCAGCAAGCCTCTGTTCTGCCGGCCGGAATTCCAGA
CGGTACGACACGGCGCAGAAGAGGCACAGCACGTCCGGGTTCAAAAGCTGCAAAACTTCGTGAAGCGGCCATTAAAACGT
TGAAACGTCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAGATTGAAAAAGAAAGCGGACTTGAAATTCCTAAT
ATGACAACCTTCATGCAAAGCCTCATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGACATCTCTACTGAGACAGAACAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.675

97.449

0.796