Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   R5H20_RS06205 Genome accession   NZ_CP137345
Coordinates   1235727..1236308 (+) Length   193 a.a.
NCBI ID   WP_006636726.1    Uniprot ID   M5PH60
Organism   Bacillus sp. KICET-3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1230727..1241308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS06180 (R5H20_06180) - 1231046..1231167 (-) 122 Protein_1167 acetyl-CoA C-acyltransferase -
  R5H20_RS23540 - 1231235..1232059 (-) 825 WP_411859080.1 methyl-accepting chemotaxis protein -
  R5H20_RS23545 - 1232042..1232584 (-) 543 Protein_1169 protoglobin family protein -
  R5H20_RS06190 (R5H20_06190) - 1232632..1234161 (-) 1530 WP_317907732.1 FAD-dependent oxidoreductase -
  R5H20_RS06195 (R5H20_06195) - 1234296..1235153 (+) 858 WP_006636724.1 SDR family oxidoreductase -
  R5H20_RS06200 (R5H20_06200) - 1235222..1235455 (-) 234 WP_006636725.1 IDEAL domain-containing protein -
  R5H20_RS06205 (R5H20_06205) comK 1235727..1236308 (+) 582 WP_006636726.1 competence protein ComK Regulator
  R5H20_RS06210 (R5H20_06210) - 1236302..1236667 (-) 366 WP_006636727.1 hypothetical protein -
  R5H20_RS06215 (R5H20_06215) - 1236898..1237506 (+) 609 WP_006636728.1 TVP38/TMEM64 family protein -
  R5H20_RS06220 (R5H20_06220) lepB 1237519..1238034 (+) 516 WP_006636729.1 signal peptidase I -
  R5H20_RS06225 (R5H20_06225) - 1238191..1239952 (-) 1762 Protein_1177 S8 family serine peptidase -
  R5H20_RS06230 (R5H20_06230) - 1240531..1240758 (+) 228 WP_123032305.1 JAB domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22585.72 Da        Isoelectric Point: 9.4506

>NTDB_id=897568 R5H20_RS06205 WP_006636726.1 1235727..1236308(+) (comK) [Bacillus sp. KICET-3]
MSNTEDMTRDSYEVNSSTMAVLPLDEGKKPASKVIETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSISSFENQVYRTAWLRTKFLDRIEG
SAVQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=897568 R5H20_RS06205 WP_006636726.1 1235727..1236308(+) (comK) [Bacillus sp. KICET-3]
ATGAGCAATACCGAAGATATGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTGCTGCCTCTTGATGAGGG
GAAAAAGCCCGCTTCAAAAGTAATTGAAACCGACAGGACATTTCGGGTCAATATGAGGCCCTTCCAAATTATAGAGAGAA
GCTGCCGCTATTTCGGCTCAAGCTATGCGGGAAGAAAAGCCGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCAACAAGGCCTCAATGCGGGTGGCTTTCACA
TGCGCACGTTCATGAATTCCGTGCGGCAAAGTATGACAACACATTCGTCACGTTTGTAAATGGCGAATCTTTGGAGCTGC
CGGTTTCCATCTCATCTTTTGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACCAAGTTTCTCGATCGGATTGAAGGA
AGCGCCGTGCAGAAAAAACAGGAATTTATGCTGTATCCAAAGGAAGACCGGAACCAGCTGATATATGAATTCATCCTCAG
GGAGCTGAAAAAACGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.876

100

0.679